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Multiple tissue RNA sequencing of two Arabidopsis thaliana MAGIC founder accessions

ABSTRACT: We sequenced messenger RNA isolated from seeding, root, and floral bud tissue for 2 MAGIC founder accessions of Arabidopsis thaliana. The resulting data was used for validation of gene models, and provides a resource to assess tissue-specific expression. Examination of RNA expression across tissues (seedling, root, floral bud) for 2 accessions (Col-0, Can-0).

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Richard Clark

PROVIDER: E-GEOD-30795 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Multiple reference genomes and transcriptomes for Arabidopsis thaliana.

Gan Xiangchao X Stegle Oliver O Behr Jonas J Steffen Joshua G JG Drewe Philipp P Hildebrand Katie L KL Lyngsoe Rune R Schultheiss Sebastian J SJ Osborne Edward J EJ Sreedharan Vipin T VT Kahles André A Bohnert Regina R Jean Géraldine G Derwent Paul P Kersey Paul P Belfield Eric J EJ Harberd Nicholas P NP Kemen Eric E Toomajian Christopher C Kover Paula X PX Clark Richard M RM Rätsch Gunnar G Mott Richard R

Nature 20110828 7365

Genetic differences between Arabidopsis thaliana accessions underlie the plant's extensive phenotypic variation, and until now these have been interpreted largely in the context of the annotated reference accession Col-0. Here we report the sequencing, assembly and annotation of the genomes of 18 natural A. thaliana accessions, and their transcriptomes. When assessed on the basis of the reference annotation, one-third of protein-coding genes are predicted to be disrupted in at least one accessio ...[more]

PMID: 21874022

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