Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Noccaea genus (Brassicaceae) from France

ABSTRACT: The leaf transcriptome of the nickel hyperaccumulator specie Noccaea caerulescens subsp. fimiensis living on serpentine soils were compared to the closely related non-nickel-accumulators Noccaea caerulescens "Viviez" growing on a zinc mining site and Noccaea montana living on serpentine soil, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.

ORGANISM(S): Thlaspi montanum Noccaea caerulescens

PROVIDER: GSE115411 | GEO | 2019/06/05

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Similar Datasets

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Leucocroton and Lasiocroton genus (Euphorbiaceae) from Cuba

Project description:The leaf transcriptome of the nickel hyperaccumulator Leucocroton havanensis (Euphorbiaceae) living on serpentine Cuabal, from Cuba, was compared to the closely related non-accumulator Lasiocroton microphyllus living on Gallery forest on limestone soil, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.

2019-06-05 | GSE116049 | GEO

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Psychotria genus (Rubiacaeae) from Cuba

Project description:The leaf transcriptome of the nickel hyperaccumulator species Psychotria grandis and Psychotria costivenia (Rubiaceae) from Cuba were compared to the closely related non-accumulator Psychotria revoluta, living on Gallery forest on serpentine soil, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.

2019-06-05 | GSE116050 | GEO

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Geissois genus (Cunoniaceae) endemic from New Caledonia

Project description:The leaf transcriptome of the nickel hyperaccumulator Geissois pruinosa (Rubiaceae) endemic from New Caledonia was compared to the closely related non-accumulator Geissois racemosa, living respectively in serpentine maquis or rainforest on limestone, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.

2019-06-05 | GSE116048 | GEO

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Homalium genus (Salicaceae) endemic from New Caledonia

Project description:The leaf transcriptome of the nickel hyperaccumulator species Homalium kanaliense (Salicaceae) endemic from New caledonia were compared to the closely related non-accumulator Homalium betulifolium, living on Gallery forest or maquis on serpentine soil, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.

2019-06-05 | GSE116052 | GEO

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Psychotria genus (Rubiacaeae) endemic from New Caledonia

Project description:The leaf transcriptome of the nickel hyperaccumulator Psychotria gabriellae (Rubiaceae) endemic from New Caledonia was compared to the closely related non-accumulator Psychotria semperflorens, living in sympatry with P. gabriellae in rain forest on serpentine soil, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.

2019-06-05 | GSE116051 | GEO

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Phyllanthus genus (Phyllanthaceae) from New Caledonia.

Project description:The leaf transcriptome of the nickel hyperaccumulator Phyllanthus luciliae (Phyllanthaceae) endemic from New Caledonia was compared to the related non-accumulator Phyllanthus conjugatus var. ducosensis, living respectively on ultramafic and sedimentary soil, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.

2020-08-17 | GSE154372 | GEO

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Noccaea genus (Brassicaceae) from France

Project description:Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Noccaea genus (Brassicaceae) from France

| PRJNA474900 | ENA

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from diverse genera and geographic locations

Project description:Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from diverse genera and geographic locations

| PRJNA476917 | ENA

Comparative analysis the transcriptomes of the hyperaccumulator Sedum plumbizincicola and the non-hyperaccumulator Sedum alfredii (NHE)

Project description:The aim of this study is to investigate whether the known mechanisms of hyperaccumulaion in Brassicaceae hyperaccumulators (Arabidopsis halleri and Noccaea caerulescens) are conserved among different hyperaccumulating species or if there exist unknown mechanismsin other metal hyperaccumulating species.The comparison of transcriptomes between hyperaccumulator Sedum plumbizincicola and non-hyperaccumulator S. alfredii (NHE) was performed by taking advantage of next-generation sequencing.The data suggested that increased active uptake, long-distance transport and efficient chelation of heavy metals might represent common mechanisms occurred in various hyperaccumulators. Moreover, we found that those genes showing constitutively higher expression in S. plumbizincicola shoots are significantly enriched in processes related to cell wall metabolism, including biosynthesis/modification of cellulose, lignin, pectin, glucan, and other cell wall related components.

2017-10-01 | GSE92529 | GEO

Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Psychotria genus (Rubiacaeae) from Cuba

Project description:Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Psychotria genus (Rubiacaeae) from Cuba

| PRJNA476927 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data