Proteomics

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RUFY3 links Arl8b and JIP4-Dynein complex to regulate lysosome size and positioning


ABSTRACT: The whole-cell scale spatial organization of lysosomes is regulated by their bidirectional motility on microtubule tracks. Small GTP-binding (G) protein, Arl8b, stimulates the anterograde transport of lysosomes by recruiting adaptor protein SKIP (also known as PLEKHM2), which in turn couples the microtubule motor kinesin-1. Here, we have identified an Arl8b effector, RUN and FYVE domaincontaining protein family member 3, RUFY3, which drives the retrograde transport of lysosomes. Artificial targeting of RUFY3 to the surface of mitochondria was sufficient to drive their perinuclear positioning. We find that RUFY3 interacts with the JIP4-Dynein-Dynactin complex and mediates Arl8b association with the retrograde motor complex. The mobile fraction of the total lysosomes per cell was significantly enhanced upon RUFY3 depletion, suggesting that RUFY3 maintains the lysosomes clustering within the perinuclear cloud. Expectedly, RUFY3 knockdown disrupted the perinuclear positioning of lysosomes upon nutrient starvation and/or serum depletion, although lysosome continued to undergo fusion with autophagosomes. Interestingly, lysosome fission events were more frequent in RUFY3-depleted cells and accordingly, there was a striking reduction in lysosome size, an effect that was also observed

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Early Embryonic Cell

SUBMITTER: gaurav kumar  

LAB HEAD: Amit Tuli

PROVIDER: PXD027010 | Pride | 2022-03-23

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
GST-RUFY3_Band_A.raw Raw
GST-RUFY3_Band_A_38254_out.tgz Other
GST-RUFY3_Band_B.raw Raw
GST-RUFY3_Band_B_38282_out.tgz Other
GST-RUFY3_Band_C.raw Raw
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Publications

RUFY3 links Arl8b and JIP4-Dynein complex to regulate lysosome size and positioning.

Kumar Gaurav G   Chawla Prateek P   Dhiman Neha N   Chadha Sanya S   Sharma Sheetal S   Sethi Kanupriya K   Sharma Mahak M   Tuli Amit A  

Nature communications 20220321 1


The bidirectional movement of lysosomes on microtubule tracks regulates their whole-cell spatial arrangement. Arl8b, a small GTP-binding (G) protein, promotes lysosome anterograde trafficking mediated by kinesin-1. Herein, we report an Arl8b effector, RUFY3, which regulates the retrograde transport of lysosomes. We show that RUFY3 interacts with the JIP4-dynein-dynactin complex and facilitates Arl8b association with the retrograde motor complex. Accordingly, RUFY3 knockdown disrupts the position  ...[more]

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