Genomics

Dataset Information

7

Transcription profiling of mouse pneumonectomy vs. sham treated time course to identify mesenchymal signature of post-pneumonectomy lung regeneration in adult mice


ABSTRACT: The adult human lung has a very limited capacity to regenerate functional alveoli. In contrast, adult mice have a remarkable capacity for neoalveolarization following either lung resection or injury. The molecular basis for this unique capability to regenerate lung tissue in mice is largely unknown. We examined the transcriptomic responses to single lung pneumonectomy in adult mice in order to elucidate prospective molecular signaling used in this species during lung regeneration. Unilateral left pneumonectomy or sham thoracotomy was performed under general anesthesia (n = 8 mice per group for each of the four time points). Total RNA was isolated from the remaining lung tissue at four time points post-surgery (6 hours, 1 day, 3 days, 7 days) and analyzed using microarray technology. The observed transcriptomic patterns revealed mesenchymal cell signaling, including up-regulation of genes previously associated with activated fibroblasts (Tnfrsf12a, Tnc, Eln, Col3A1), as well as modulation of Igf1-mediated signaling. The data set also revealed early down-regulation of pro-inflammatory cytokine transcripts, up-regulation of genes involved in T cell development and function, but few similarities to transcriptomic patterns observed during embryonic or post-natal lung development. Immunohistochemical analysis suggests that early fibroblast but not myofibroblast proliferation is important during lung regeneration and may explain the preponderance of mesenchymal-associated genes that are over-expressed in this model. This appears to differ from embryonic alveologenesis. These data suggest that modulation of mesenchymal cell signaling and proliferation may act in concert with immunomodulation to control inflammation during post-pneumonectomy lung regeneration in adult mice. Experiment Overall Design: For each of the four time points (6 hr, 1 day, 3 day, 7 day), the mice were divided into two groups: (1) pneumonectomy (PNY) and (2) sham operated (SHAM - thoracotomy without lung resection), with eight animals in each group. One microarray was performed on pooled lung tissue from these 8 animals for each time point. Analysis of expression in PNY vs SHAM animals was performed in two ways: using all four microarrays as replicates in a time-independent analysis, as well as analysis of each time point separately (time-dependent) without replicates.

INSTRUMENT(S): 418 [Affymetrix]

ORGANISM(S): Mus musculus  

SUBMITTER: Julia Paxson  

PROVIDER: E-GEOD-15999 | ArrayExpress | 2009-05-16

SECONDARY ACCESSION(S): GSE15999PRJNA115413

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-15999.README.txt Txt
E-GEOD-15999.eSet.r Other
E-GEOD-15999.idf.txt Idf
E-GEOD-15999.processed.1.zip Processed
E-GEOD-15999.raw.1.zip Raw
Items per page:
1 - 5 of 6

Similar Datasets

2013-08-09 | E-GEOD-39817 | ArrayExpress
2009-05-08 | GSE15999 | GEO
2009-05-08 | GSE15999 | GEO
2009-01-01 | S-EPMC2770038 | BioStudies
2010-06-20 | E-GEOD-18703 | ArrayExpress
2011-06-08 | E-GEOD-29769 | ArrayExpress
2017-01-01 | S-EPMC5559972 | BioStudies
2015-09-01 | E-GEOD-61592 | ArrayExpress
2020-01-01 | S-EPMC7186418 | BioStudies
1000-01-01 | S-EPMC4061467 | BioStudies