Transcriptomics

Dataset Information

6

Exon array analysis in the mouse myoblast cell line, C2C12 cells treated with control-, Cugbp1- or Mbnl1-siRNA


ABSTRACT: CUGBP1 and MBNL1 are developmentally regulated RNA-binding proteins that are causally associated with myotonic dystrophy type 1. Using HITS-CLIP anlysis, we found CUGBP1 and MBNL1 preferentially bind to alternatively spliced introns and exons, as well as to the 3' UTRs. To analyze more directly the role of CUGBP1/MBNL1 binding in alternative splicing, we performed exon array analysis in C2C12 cells using expression arrays. We analyzed total RNA of C2C12 cells treated with control-, Cugbp1- or Mbnl1-siRNA. RNA was harvested 48 hrs after transfection.

ORGANISM(S): Mus musculus  

SUBMITTER: Akio Masuda   A Masuda  K Ohno 

PROVIDER: E-GEOD-29990 | ArrayExpress | 2012-01-03

SECONDARY ACCESSION(S): GSE29990PRJNA140711

REPOSITORIES: GEO, ArrayExpress

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