Transcriptomics

Dataset Information

8

Relation of Gene Expression Phenotype to Immunoglobulin Mutation Genotype in B Cell Chronic Lymphocytic Leukemia


ABSTRACT: The most common human leukemia is B cell chronic lymphocytic leukemia (CLL), a malignancy of mature B cells with a characteristic clinical presentation but a variable clinical course. The rearranged immunoglobulin (Ig) genes of CLL cells may be either germ-line in sequence or somatically mutated. Lack of Ig mutations defined a distinctly worse prognostic group of CLL patients raising the possibility that CLL comprises two distinct diseases. Using genomic-scale gene expression profiling, we show that CLL is characterized by a common gene expression "signature," irrespective of Ig mutational status, suggesting that CLL cases share a common mechanism of transformation and/or cell of origin. Nonetheless, the expression of hundreds of other genes correlated with the Ig mutational status, including many genes that are modulated in expression during mitogenic B cell receptor signaling. These genes were used to build a CLL subtype predictor that may help in the clinical classification of patients with this disease. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Computed

ORGANISM(S): Homo sapiens  

SUBMITTER: Ash Alizadeh   unknown Stanford Microarray Database 

PROVIDER: E-GEOD-3211 | ArrayExpress | 2005-08-27

SECONDARY ACCESSION(S): GSE3211PRJNA92883

REPOSITORIES: GEO, ArrayExpress

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Publications

Relation of gene expression phenotype to immunoglobulin mutation genotype in B cell chronic lymphocytic leukemia.

Rosenwald A A   Alizadeh A A AA   Widhopf G G   Simon R R   Davis R E RE   Yu X X   Yang L L   Pickeral O K OK   Rassenti L Z LZ   Powell J J   Botstein D D   Byrd J C JC   Grever M R MR   Cheson B D BD   Chiorazzi N N   Wilson W H WH   Kipps T J TJ   Brown P O PO   Staudt L M LM  

The Journal of experimental medicine 20011201 11


The most common human leukemia is B cell chronic lymphocytic leukemia (CLL), a malignancy of mature B cells with a characteristic clinical presentation but a variable clinical course. The rearranged immunoglobulin (Ig) genes of CLL cells may be either germ-line in sequence or somatically mutated. Lack of Ig mutations defined a distinctly worse prognostic group of CLL patients raising the possibility that CLL comprises two distinct diseases. Using genomic-scale gene expression profiling, we show  ...[more]

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