Genomics

Dataset Information

297

HP1b Q4114.OR Head Nuclei.Solexa


ABSTRACT: modENCODE_submission_5590 This submission comes from a modENCODE project of Gary Karpen. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We aim to determine the locations of 125 chromosomal proteins across the Drosophila melanogaster genome. The proteins under study are involved in basic chromosomal functions such as DNA replication, gene expression, gene silencing, and inheritance. We will perform Chromatin ImmunoPrecipitation (ChIP) using the Illumina NGS platform. We will initially assay localizations using chromatin from three cell lines and two embryonic stages, and will then extend the analysis of a subset of proteins to four additional animal tissues/stages For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Developmental Stage: Mixed Adult; Genotype: wild type; EXPERIMENTAL FACTORS: Strain Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); tissue (organism part) ; Antibody HP1b Q4114 (target is HP1b); Developmental Stage Mixed Adult

ORGANISM(S): Drosophila melanogaster  

SUBMITTER: Nicole Riddle   Gary Karpen  DCC modENCODE  Vincenzo Pirrotta  Art Alekseyenko  Andrey Gortchakov  Greg Shanower  Michael Tolstorukov  Sarah Elgin  Aki Minoda  Mitzi Kuroda  Cameron Kennedy  Yuri Schwartz  Peter Park  Peter Kharchenko 

PROVIDER: E-GEOD-47326 | ArrayExpress | 2013-05-28

SECONDARY ACCESSION(S): SRP023451GSE47326

REPOSITORIES: GEO, ArrayExpress, ENA

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