Genomics

Dataset Information

4

Gene expression profiling of 151 pediatric low-grade gliomas


ABSTRACT: We performed gene expression profiling on 151 paraffin-embedded PLGGs from different locations, ages, histological subtypes as well as BRAF genetic status We also compared molecular differences to normal pediatric brain expression profiles to observe whether those patterns were mirrored in normal brain expression. We analyzed the expression of 6,100 genes among 151 FFPE pediatric and 15 FFPE adult low-grade gliomas and analyzed how the expression patterns changes with location, age, histology and BRAF genomic status and how those differences were mirrored in normal brain expression. The values in the sample 'characteristics' columns represent; Location; SUP= Supratentorial, INF= Infratentorial Histology; PA= pilocytic astrocytoma, GG= ganglioglioma, DNT= dysembryoplastic neuroepithelial tumor, OD= oligodendroglial tumors, NOS= not otherwise specified tumors BRAF status; DUP= BRAF duplication, MUT= BRAF V600E mutation, WT= wild type, ND= not determined Primary or recurrent tumor; P=primary, R=recurrent Primary tumor that further progressed; 1=yes, 0=no, _=recurrent tumors only

ORGANISM(S): Homo sapiens  

SUBMITTER: Pratiti Bandopadhayay   Guillaume Bergthold  Rameen Beroukhim  Mark W Kieran  Jennifer A Chan 

PROVIDER: E-GEOD-60898 | ArrayExpress | 2014-08-29

SECONDARY ACCESSION(S): GSE60898PRJNA259761

REPOSITORIES: GEO, ArrayExpress

Dataset's files

Source:
Action DRS
E-GEOD-60898.additional.1.zip Other
E-GEOD-60898.idf.txt Idf
E-GEOD-60898.processed.1.zip Processed
E-GEOD-60898.sdrf.txt Txt
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