Transcriptomics

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Gene expression changes in Piloderma croceum-Quercus robur ectomycorrhizal roots compared to Piloderma croceum free-living mycelium


ABSTRACT: Illumina HiSeq technology was used to generate mRNA profiles from Piloderma croceum ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 8 weeks, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Piloderma croceum (http://genome.jgi-psf.org/Pilcr1/Pilcr1.home.html) using CLC Genomics Workbench 6. mRNA profiles from Piloderma croceum ectomycorrhizal roots and free-living mycelium were generated by paired-end (2x100bp) Illumina HiSeq2000 sequencing. Three biological replicates were sequenced for mycorrhizal and mycelium samples.

ORGANISM(S): Piloderma croceum  

SUBMITTER: Mika Tarrka  Annegret Kohler   F Buscot   S Herrmann   Francis Martin    

PROVIDER: E-GEOD-63925 | ArrayExpress | 2015-02-06

SECONDARY ACCESSION(S): SRP050868GSE63925PRJNA269500

REPOSITORIES: GEO, ArrayExpress, ENA

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