Transcriptomics

Dataset Information

238

Transcription profiling by array of Arabidopsis thaliana wild type and time for coffee mutant (tic-2) at dawn to investigate the role of TIC in the morning perception process


ABSTRACT: To investigate the role of TIC in the morning perception process, we performed a transcriptome analysis of the wild type and time for coffee mutant (tic-2) at dawn. An additional file is included. In this file, the expression values for the replicates are condensed in a single data point obtaining one mean and standard deviation of the expression values per genotype. The protocol for this file is: log2 fold change followed by a False Discovery Rate with a p-value equal or below 0.05.

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: alfredosvwm@yahoo.com.mx Sanchez-Villarreal  

PROVIDER: E-MTAB-1362 | ArrayExpress | 2013-10-10

REPOSITORIES: ArrayExpress

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Publications

TIME FOR COFFEE is an essential component in the maintenance of metabolic homeostasis in Arabidopsis thaliana.

Sanchez-Villarreal Alfredo A   Shin Jieun J   Bujdoso Nora N   Obata Toshihiro T   Neumann Ulla U   Du Shen-Xiu SX   Ding Zhaojun Z   Davis Amanda M AM   Shindo Takayuki T   Schmelzer Elmon E   Sulpice Ronan R   Nunes-Nesi Adriano A   Stitt Mark M   Fernie Alisdair R AR   Davis Seth J SJ  

The Plant journal : for cell and molecular biology 20130823 2


Plants often respond to environmental changes by reprogramming metabolic and stress-associated pathways. Homeostatic integration of signaling is a central requirement for ensuring metabolic stability in living organisms. Under diurnal conditions, properly timed rhythmic metabolism provides fitness benefits to plants. TIME FOR COFFEE (TIC) is a circadian regulator known to be involved in clock resetting at dawn. Here we explored the mechanism of influence of TIC in plant growth and development, a  ...[more]

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