Transcriptomics

Dataset Information

324

RNA-seq of coding RNA from human IMR-32 cells treated with azakenpaullone, BIO or LiCl to investigate GSK-inhibitor treatment


ABSTRACT: Cells were cultured in RPMI 1640 (Gibco), supplemented with 10% fetal bovine serum (FBS) (Gibco), 2mM L-glutamine (Gibco) and 1% Penicillin-Streptomycin solution (Gibco). IMR32 cells were treated as follows; untreated control, 24h 1uM azakenpaullone, 24h 1uM BIO or 24h 28mM LiCl with biological duplicates.

INSTRUMENT(S): Illumina Genome Analyzer IIx

ORGANISM(S): Homo sapiens  

SUBMITTER: David J Duffy   Thomas Schwarzl  

PROVIDER: E-MTAB-1684 | ArrayExpress | 2014-10-01

SECONDARY ACCESSION(S): ERP003495

REPOSITORIES: ArrayExpress, ENA

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Publications


Despite intensive study, many mysteries remain about the MYCN oncogene's functions. Here we focus on MYCN's role in neuroblastoma, the most common extracranial childhood cancer. MYCN gene amplification occurs in 20% of cases, but other recurrent somatic mutations are rare. This scarcity of tractable targets has hampered efforts to develop new therapeutic options. We employed a multi-level omics approach to examine MYCN functioning and identify novel therapeutic targets for this largely un-drugga  ...[more]

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