Transcriptomics

Dataset Information

298

Genome wide transcriptional profiling of Herbaspirillum seropedicae SmR1 grown in the presence of naringenin


ABSTRACT: Herbaspirillum seropedicae is a diazotrophic bacterium which associates endophytically with economically important gramineae. Flavonoids such as naringenin, have been shown to have an effect on the interaction between H. seropedicae and its host plants. We used a high-throughput sequencing based method (RNA-Seq) to access the influence of naringenin on the whole transcriptome profile of H. seropedicae.

INSTRUMENT(S): AB SOLiD 3 Plus System

ORGANISM(S): Herbaspirillum seropedicae SmR1  

SUBMITTER: Eduardo Balsanelli   Michelle Z Tadra-Sfeir  

PROVIDER: E-MTAB-3435 | ArrayExpress | 2015-04-30

SECONDARY ACCESSION(S): ERP010006

REPOSITORIES: ArrayExpress, ENA

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Publications


Herbaspirillum seropedicae is a diazotrophic bacterium which associates endophytically with economically important gramineae. Flavonoids such as naringenin have been shown to have an effect on the interaction between H. seropedicae and its host plants. We used a high-throughput sequencing based method (RNA-Seq) to access the influence of naringenin on the whole transcriptome profile of H. seropedicae. Three hundred and four genes were downregulated and seventy seven were upregulated by naringeni  ...[more]

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