Transcriptomics

Dataset Information

416

Transcription profiling by high throughput sequencing of maize (B73) shoot-borne root stele response to local high nitrate stimulation


ABSTRACT: In this study RNA-sequencing was used to monitor gene expression changes in stele tissue of maize (Zea mays L.) shoot-borne roots in response to local high nitrate stimulation to gain a better understanding of the mechanisms underlying nitrate signal and lateral root development.M

REANALYSED by: E-MTAB-4253

INSTRUMENT(S): Illumina Genome Analyzer IIx

ORGANISM(S): Zea mays  

SUBMITTER: Chunjian Li   Frank Hochholdinger  

PROVIDER: E-MTAB-4253 | ArrayExpress | 2015-10-08

SECONDARY ACCESSION(S): SRP058076

REPOSITORIES: ArrayExpress, ENA

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Publications

Cell Type-Specific Gene Expression Analyses by RNA Sequencing Reveal Local High Nitrate-Triggered Lateral Root Initiation in Shoot-Borne Roots of Maize by Modulating Auxin-Related Cell Cycle Regulation.

Yu Peng P   Eggert Kai K   von Wirén Nicolaus N   Li Chunjian C   Hochholdinger Frank F  

Plant physiology 20150721 1


Plants have evolved a unique plasticity of their root system architecture to flexibly exploit heterogeneously distributed mineral elements from soil. Local high concentrations of nitrate trigger lateral root initiation in adult shoot-borne roots of maize (Zea mays) by increasing the frequency of early divisions of phloem pole pericycle cells. Gene expression profiling revealed that, within 12 h of local high nitrate induction, cell cycle activators (cyclin-dependent kinases and cyclin B) were up  ...[more]

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