Transcriptomics

Dataset Information

349

RNA-seq of Malassezia sympodialis


ABSTRACT: This data set is part of a study where the genome of Malassezia sympodialis (strain ATCC 42132) was sequenced using long-read technology and annotated using RNA-seq and proteogenomics. RNA was extracted at two different culture times (2 and 4 days). Seven RNA-seq libraries were prepared from independent samples. Two samples (P2 and P3) were enriched for protein-coding RNA using poly(A)-selection. The remaining five samples were processed with RiboMinus to deplete ribosomal RNA, and thus retain both mRNA and non-ribosomal noncoding RNA for sequencing. In total, we obtained 71 million RNA-seq read pairs mapping to genomic regions other than the highly expressed ribosomal loci.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Malassezia sympodialis  

SUBMITTER: Annika Scheynius   Benjamin Sigurgeirsson   Par G Engstrom   Tina Holm   Joakim Lundeberg 

PROVIDER: E-MTAB-4589 | ArrayExpress | 2017-01-10

SECONDARY ACCESSION(S): ERP014704

REPOSITORIES: ArrayExpress, ENA

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