Transcriptomics

Dataset Information

299

GENCODE PCR-Seq Batch VII


ABSTRACT: As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch VII, which targets annotations from Gencode 8 (March 2011).

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Homo sapiens  

TISSUE(S): Heart, Spleen, Testis, Brain, Liver, Lung, Muscle, Kidney

SUBMITTER: Tim Hubbard   Jose M Gonzalez   Alexandre Reymond  

PROVIDER: E-MTAB-935 | ArrayExpress | 2012-02-01

SECONDARY ACCESSION(S): ERP001145

REPOSITORIES: ArrayExpress, ENA

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Publications


BACKGROUND: The GENCODE consortium was formed to identify and map all protein-coding genes within the ENCODE regions. This was achieved by a combination of initial manual annotation by the HAVANA team, experimental validation by the GENCODE consortium and a refinement of the annotation based on these experimental results. RESULTS: The GENCODE gene features are divided into eight different categories of which only the first two (known and novel coding sequence) are confidently predicted to be pro  ...[more]

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