Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Yellowstone gradients

PROVIDER: PRJEB20056 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR1887640.fastq.gz	Fastqsanger.gz
	ERR1887650.fastq.gz	Fastqsanger.gz
	ERR1887660.fastq.gz	Fastqsanger.gz
	ERR1887670.fastq.gz	Fastqsanger.gz
	ERR1887680.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 424

Similar Datasets

Pervasive effects of aging on gene expression in wild wolves

Project description:We sequenced total RNA from whole blood samples of 27 wild gray wolves from Yellowstone National Park.

2016-07-27 | GSE80440 | GEO

Pervasive effects of aging on gene expression in wild wolves

Project description:We sequenced total RNA from whole blood samples of 27 wild gray wolves from Yellowstone National Park. Gene expression level analysis of both male and female wolves, ranging from ages 0.8-8.8 years.

2016-07-27 | E-GEOD-80440 | biostudies-arrayexpress

CGH of stage 13 amplifying follicle cells to measure changes in replication fork progression in DNA damage checkpoint and double-strand break repair mutants

Project description:Comparative genomic hybridization was performed to compare amplification gradients of stage 13 follicle cells from several DNA damage checkpoint and double-strand break repair mutants to wild-type (OrR) gradients. Two-three replicates were done for each genotype.

2015-06-18 | GSE66690 | GEO

CGH of Drosophila Follicle Cell Amplicons in double-strand break repair mutants

Project description:CGH of stage 13 amplifying follicle cells to measure changes in replication fork progression in double-strand break repair mutants Comparative genomic hybridization was performed to compare amplification gradients of stage 13 follicle cells from several double-strand break repair mutants to wild type (OrR) gradients. Two-three replicates were done for each genotype.

2017-02-08 | GSE86012 | GEO

Sulfurihydrogenibium proteomics

Project description:To understand the ecophysiology of Sulfurihydrogenibium spp. in situ, integrated metagenomic, metatranscriptomic and metaproteomic analyses were conducted on a microbial community from Narrow Gauge at Mammoth Hot Springs, Yellowstone National Park.

2020-05-26 | PXD004323 | Pride

CGH of stages 10B and 13 amplifying follicle cells to determine the effect SuUR has on replication fork progression

Project description:Comparative genomic hybridization was performed to compare amplificaiton gradients in genomic DNA derived from stage 13 egg chambers of wild-type, suppressor of under-replication (SuUR) mutant and SuUR overexpression, compared with 0-2hr diploid embryo gDNA. Comparative genomic hybridization was performed to compare amplificaiton gradients in genomic DNA derived from stage 10B egg chambers of wild-type, compared with 0-2hr diploid embryo gDNA.

2014-11-10 | GSE56054 | GEO

Boundary Formation is an Inherent Property of Mobile Small RNA Gradients

Project description:Small RNAs recently emerged as a new class of mobile instructive signals in development. Here, we investigate their mechanism of action and show that the gradients formed by mobile small RNAs generate sharply defined domains of target gene expression. By modulating the source of artificial miRNAs we show that boundary formation is an inherent property of the small RNA gradient itself. The threshold-based readout of such gradients is highly sensitive to small RNA levels at the source, allowing plasticity in the positioning of a target gene expression boundary. In addition to generating sharp expression domains of their immediate targets, the readouts of opposing small RNA gradients enable formation of stable and uniformly positioned developmental boundaries. These novel patterning properties of small RNAs are reminiscent of those of morphogens in animal systems. However, their exceptionally high specificity, direct mode of action, and the fully intrinsic nature of their gradients, distinguish mobile small RNAs from classical morphogens. Our findings present mobile small RNAs and their targets as highly portable and evolutionarily-tractable regulatory modules through which to create pattern in development and beyond.

2017-12-01 | GSE94720 | GEO

From genomes to cultures: a parasitic Nanoarchaota system from a Yellowstone geothermal spring.

Project description:From genomes to cultures: a parasitic Nanoarchaota system from a Yellowstone geothermal spring.

2016-05-04 | MSV000079705 | MassIVE

RT alignment test of DeepRTAlign using data under two gradients

Project description:Nano-flow LC-MS/MS analysis of 293T digest in two gradients.

2023-08-01 | PXD044221 |

A microfluidics workflow for spatial analysis of microenvironmental gradient impact on cancer cell phenotypes

Project description:Despite the physiological and pathophysiological significance of microenvironmental gradients, tools for generating such gradients and analysing their impact on cellular phenotypes are lacking. Here we present an integrated microfluidics-based workflow for mimicking extracellular pH gradients characteristic of solid tumors, and studying their multifactorial impact on cancer cells. Our microfluidics device generates a pH gradient across cancer cell 3D cultures in an extracellular matrix. The gradient, validated using pH-sensitive fluorophores can be rapidly controlled to represent spatiotemporal microenvironmental changes, and the device allows high resolution live imaging of, e.g., cell motility and chemotaxis. The device can be reopened, allowing immunofluorescence analysis of phenotypes and spatially resolved analysis of gene expression changes across the pH gradient. The workflow is easily adaptable for other gradients and multiple cell types, making it broadly applicable for integrated analysis of roles of microenvironmental gradients in biology.

2024-05-07 | GSE242233 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data