<HashMap><database>bioimages</database><scores/><additional><omics_type>Unknown</omics_type><submitter>Oluwatobi Ogun</submitter><journal>The Journal of Cell Biology</journal><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/S-JCBD-201404016</full_dataset_link><attach_to>JCB</attach_to><legend>Shown is an immunohistochemistry analysis conducted at 3 days post-fertilization of neuromasts from whole-mount zebrafish embryos of clarin-1 morphants co-injected with a truncated clarin-1 cRNA. Hair cells were immunostained for pcdh15a (red) and counter-stained for F-actin (green). The truncated version of clarin-1 transcript does not rescue the morphant phenotype.</legend><legend>Shown is an immunohistochemistry analysis conducted 4 days post-fertilization of the anterior crista from whole-mount zebrafish larvae. Hair cells were immunostained for clarin-1 (red) and counter-stained for F-actin (green). Clarin-1 localizes below the cuticular plate and at the fonticulus.</legend><legend>Shown is an immunohistochemistry analysis conducted at 2 days post-fertilization of anterior macula from whole-mount transgenic (bnr3c:mGFP) zebrafish, clarin-1 morphant embryos co-injected with clarin-1 cRNA. Hair cells were immunostained for the pre-synaptic marker ribeye b (red) and the post-synapitc marker MAGUK (green). Transgenic brn3c fish express a membrane-targeted GFP (white) in ear and neuromast hair cells and show normal distribution of ribeye b puncta when co-injected with clarin-1 cRNA.</legend><legend>Shown is an immunohistochemistry analysis conducted at 3 days post-fertilization of neuromasts from whole-mount control-injected transgenic (bnr3c:mGFP) zebrafish embryos. Hair cells were immunostained for the pre-synaptic marker ribeye b (red) and the post-synaptic marker MAGUK (green). Bnr3c transgenic fish express a membrane-targeted GFP (white) in ear and neuromast hair cells and show basal distribution of ribeye b puncta.</legend><legend>Shown is an immunohistochemistry analysis conducted 4 days post-fertilization of neuromasts from whole-mount zebrafish larvae. Hair cells were immunostained for clarin-1 (red) and the transition zone marker cc2d2a (green). Clarin-1 localizes at the most basal region of this sub-ciliary compartment.</legend><legend>Shown is an immunohistochemistry analysis conducted at 3 days post-fertilization of neuromasts from whole-mount transgenic (bnr3c:mGFP) zebrafish, clarin-1 morphant embryos. Brn3c transgenic fish were microinjected with the clarin-1 morpholino mixture and immunostained for the pre-synaptic marker ribeye b (red) and the post-synaptic marker MAGUK (green). Bnr3c transgenic fish express a membrane-targeted GFP (white) in ear and neuromast hair cells. Clarin-1 morphants show an increase in the number of ribeye b puncta.</legend><legend>Shown is an immunohistochemistry analysis conducted at 2 days post-fertilization of anterior macula from whole-mount control-injected  transgenic (bnr3c:mGFP) zebrafish embryos. Hair cells were immunostained for the pre-synaptic marker ribeye b (red) and the post-synaptic marker MAGUK (green). Bnr3c transgenic fish express a membrane-targeted GFP (white) in ear and neuromast hair cells and show basal distribution of ribeye b puncta.</legend><legend>Shown is an immunohistochemistry analysis conducted 4 days post-fertilization of neuromasts from whole-mount zebrafish larvae. Hair cells were immunostained for clarin-1 (red) and counter-stained with phalloidin for F-actin (green). Clarin-1 localizes below the cuticular plate and at the point of insertion of the kinocilium.</legend><legend>Shown is an immunohistochemistry analysis conducted at 2 days post-fertilization of anterior macula from whole-mount  transgenic (bnr3c:mGFP) zebrafish, clarin-1 morphant embryos. Inner ear hair cells were immunostained for the pre-synaptic marker ribeye b (red) and the post-synaptic marker MAGUK (green). This transgenic fish line expresses membrane-targeted GFP (white) in ear and neuromast hair cells. Clarin-1 morphants show accumulation of ribeye b puncta at the apical aspect of the hair cells.</legend><legend>Shown is an immunohistochemistry analysis conducted at 3 days post-fertilization of neuromasts from whole-mount transgenic (bnr3c:mGFP) zebrafish, clarin-1 morphant embryos co-injected with a truncated clarin-1 cRNA. Hair cells were immunostained for the pre-synaptic marker ribeye b (red) and the post-synaptic marker MAGUK (green). Transgenic brn3c fish express a membrane-targeted GFP (white) in ear and neuromast hair cells. The truncated version of the clarin-1 transcript does not rescue the morphant phenotype in the transgenic bnr3c zebrafish line.</legend><legend>Shown is an immunohistochemistry analysis conducted 3 days post-fertilization of hair cells from whole-mount zebrafish clarin-1 morphant embryos. Hair cells were immunostained for pcdh15a (red) and counter-stained for F-actin (green). Clarin-1 morphants lack Pcdh15a expression at the apical aspect of neuromast hair cells.</legend><legend>Shown is an immunohistochemistry analysis conducted 3 days post-fertilization of hair cells from whole-mount control-injected zebrafish embryos. Hair cells were immunostained for pcdh15a (red) and counter-stained for F-actin (green).</legend><legend>Shown is an immunohistochemistry analysis conducted 1 day post-fertilization of whole-mount zebrafish embryos. Hair cells were immunostained for clarin-1 (red) and counter-stained for F-actin with phalloidin (green). Clarin-1 is present in both anterior and posterior macular hair cells.</legend><legend>Shown is an immunohistochemistry analysis conducted at 3 days post-fertilization of hair cells from whole-mount embryos of clarin-1 morphants co-injected with clarin-1 cRNA. Hair cells were immunostained for pcdh15a (red) and counter-stained for F-actin (green). Pcdh15a apical expression is restored in the cRNA injected morphants.</legend><legend>Shown is an immunohistochemistry analysis conducted at 2 days post-fertilization of anterior macula from whole-mount transgenic (bnr3c:mGFP) zebrafish, clarin-1 morphant embryos co-injected with a truncated clarin-1 cRNA. Hair cells were immunostained for the pre-synaptic marker ribeye b (red) and the post-synaptic marker MAGUK (green). Bnr3c transgenic fish express a membrane-targeted GFP (white) in ear and neuromast hair cells. The truncated version of the clarin-1 transcript does not rescue the morphant phenotype in the transgenic bnr3c zebrafish line.</legend><legend>Shown is an immunohistochemistry analysis conducted at 3 days post-fertilization of neuromasts from whole-mount transgenic (bnr3c:mGFP) zebrafish, clarin-1 morphant embryos co-injected with clarin-1 cRNA. Hair cells were immunostained for the pre-synaptic marker ribeye b (red) and the post-synaptic marker MAGUK (green). Transgenic brn3c fish express a membrane-targeted GFP (white) in ear and neuromast hair cells and show normal distribution of ribeye b puncta when co-injected with clarin-1 cRNA.</legend><repository>bioimages</repository><figure_sub>Figure 8 - F</figure_sub><figure_sub>Figure 8 - C</figure_sub><figure_sub>Image 627190 (Figure 6 - K)</figure_sub><figure_sub>Image 627193 (Figure 8 - I)</figure_sub><figure_sub>Image 627191 (Figure 8 - F)</figure_sub><figure_sub>Image 627157 (Figure 1 - I-B)</figure_sub><figure_sub>Figure 9 - L</figure_sub><figure_sub>Image 627160 (Figure 2 - H)</figure_sub><figure_sub>Figure 9 - F</figure_sub><figure_sub>Image 627192 (Figure 8 - C)</figure_sub><figure_sub>Image 627159 (Figure 1 - I-F)</figure_sub><figure_sub>Figure 9 - I</figure_sub><figure_sub>Image 627158 (Figure 1 - II-D)</figure_sub><figure_sub>Figure 9 - C</figure_sub><figure_sub>Image 627196 (Figure 9 - C)</figure_sub><figure_sub>Figure 1 - II-D</figure_sub><figure_sub>Image 627188 (Figure 6 - G)</figure_sub><figure_sub>Figure 8 - L</figure_sub><figure_sub>Figure 8 - I</figure_sub><figure_sub>Image 627198 (Figure 9 - L)</figure_sub><figure_sub>Image 627189 (Figure 6 - I)</figure_sub><figure_sub>Figure 6 - K</figure_sub><figure_sub>Figure 6 - I</figure_sub><figure_sub>Image 627162 (Figure 6 - C)</figure_sub><figure_sub>Image 627195 (Figure 9 - F)</figure_sub><figure_sub>Image 627197 (Figure 9 - I)</figure_sub><figure_sub>Figure 1 - I-B</figure_sub><figure_sub>Figure 2 - H</figure_sub><figure_sub>Figure 6</figure_sub><figure_sub>Figure 9</figure_sub><figure_sub>Figure 1 - I-F</figure_sub><figure_sub>Figure 8</figure_sub><figure_sub>Figure 6 - C</figure_sub><figure_sub>Image 627194 (Figure 8 - L)</figure_sub><figure_sub>Figure 1</figure_sub><figure_sub>Figure 6 - G</figure_sub><figure_sub>Figure 2</figure_sub><pubmed_authors>Oluwatobi Ogun</pubmed_authors><pubmed_authors>Marisa Zallocchi</pubmed_authors></additional><is_claimable>false</is_claimable><name>Clarin-1 acts as a modulator of mechanotransduction activity and presynaptic ribbon assembly</name><description>Clarin-1 is a four-transmembrane protein expressed by hair cells and photoreceptors. Mutations in its corresponding gene are associated with Usher syndrome type 3, characterized by late-onset and progressive hearing and vision loss in humans. Mice carrying mutations in the clarin-1 gene have hair bundle dysmorphology and a delay in synapse maturation. In this paper, we examined the expression and function of clarin-1 in zebrafish hair cells. We observed protein expression as early as 1 d postfertilization. Knockdown of clarin-1 resulted in inhibition of FM1-43 incorporation, shortening of the kinocilia, and mislocalization of ribeye b clusters. These phenotypes were fully prevented by co-injection with clarin-1 transcript, requiring its C-terminal tail. We also observed an in vivo interact</description><dates><release>2014-11-03T11:26:22Z</release><modification>2018-11-29T11:26:22Z</modification><creation>2018-11-29T11:26:22Z</creation></dates><accession>S-JCBD-201404016</accession><cross_references><doi>10.1083/jcb.201404016</doi></cross_references></HashMap>