<HashMap><database>BioModels</database><file_versions><headers><Content-Type>application/xml</Content-Type></headers><body><files><Txt>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=curation_notes.txt</Txt><Pdf>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359.pdf</Pdf><Owl>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359-biopax2.owl</Owl><Owl>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359-biopax3.owl</Owl><Svg>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359.svg</Svg><Xml>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=manifest.xml</Xml><Xml>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359_url.xml</Xml><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=curation_image.png</Other><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359-matlab.m</Other><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359.vcml</Other><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359.sci</Other><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359-octave.m</Other><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=metadata.rdf</Other><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359.png</Other><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359_url.sedml</Other><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359.ode</Other><Other>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000359?filename=BIOMD0000000359.m</Other></files><type>primary</type></body><statusCode>OK</statusCode><statusCodeValue>200</statusCodeValue></file_versions><scores/><additional><submitter>Michael Schubert</submitter><curationStatus>Manually curated</curationStatus><modellingApproach>ordinary differential equation model</modellingApproach><levelVersion>L2V4</levelVersion><full_dataset_link>https://www.ebi.ac.uk/biomodels/BIOMD0000000359</full_dataset_link><publication_pubmed>11985578</publication_pubmed><isPrivate>false</isPrivate><repository>BioModels</repository><modelFormat>SBML</modelFormat><omics_type>Models</omics_type><tokenised_name>Panteleev2002 TFPImechanism schmema3</tokenised_name><publication_year>2002</publication_year><submissionId>MODEL1108260008</submissionId><publication_authors>Mikhail A Panteleev, Veronica I Zarnitsina, Fazoil I Ataullakhanov</publication_authors><first_author>Mikhail A Panteleev</first_author><publication>11985578,
                            We have analyzed several mathematical models that describe inhibition of the factor VIIa-tissue factor complex (VIIa-TF) by tissue factor pathway inhibitor (TFPI). At the core of these models is a common mechanism of TFPI action suggesting that only the Xa-TFPI complex is the inhibitor of the extrinsic tenase activity. However, the model based on this hypothesis could not explain well all the available experimental data. Here, we show that a good quantitative description of all experimental data could be achieved in a model that contains two more assumptions. The first assumption is based on the hypothesis originally proposed by Baugh et al. [Baugh, R.J., Broze, G.J. Jr &amp; Krishnaswamy, S. (1998) J. Biol. Chem. 273, 4378-4386], which suggests that TFPI could inhibit the enzyme-product complex Xa-VIIa-TF. The second assumption proposes an interaction between the X-VIIa-TF complex and the factor Xa-TFPI complex. Experiments to test these hypotheses are suggested.. 8, 269.
                            National Research Center for Hematology, Russian Academy of Medical Sciences, Moscow, Russia.</publication><submitter_mail>schubert@ebi.ac.uk</submitter_mail><submitter_affiliation>EBI</submitter_affiliation><publicationId>BIOMD0000000359</publicationId><pubmed_abstract>Tissue factor (TF) pathway inhibitor (TFPI) regulates factor X activation through the sequential inhibition of factor Xa and the VIIa.TF complex. Factor Xa formation was studied in a purified, reconstituted system, at plasma concentrations of factor X and TFPI, saturating concentrations of factor VIIa, and increasing concentrations of TF reconstituted into phosphatidylcholine:phosphatidylserine membranes (TF/PCPS) or PC membranes (TF/PC). The initial rate of factor Xa formation was equivalent in the presence or absence of 2.4 nM TFPI. However, reaction extent was small (&lt;20%) relative to that observed in the absence of TFPI, implying the rapid inhibition of VIIa.TF during factor X activation. Initiation of factor Xa formation using increasing concentrations of TF/PCPS or TF/PC in the presence of TFPI yielded families of progress curves where both initial rate and reaction extent were linearly proportional to the concentration of VIIa.TF. These observations were consistent with a kinetic model in which the rate-limiting step represents the initial inhibition of newly formed factor Xa. Numerical analyses of progress curves yielded a rate constant for inhibition of VIIa.TF by Xa.TFPI (>10(8) M-1.s-1) that was substantially greater than the value (7.34 +/- 0.8 x 10(6) M-1.s-1) directly measured. Thus, VIIa.TF is inhibited at near diffusion-limited rates by Xa.TFPI formed during catalysis which cannot be explained by studies of the isolated reaction. We propose that the predominant inhibitory pathway during factor X activation may involve the initial inhibition of factor Xa either bound to or in the near vicinity of VIIa.TF on the membrane surface. As a result, VIIa.TF inhibition is unexpectedly rapid, and the concentration of active factor Xa that escapes regulation is linearly dependent on the availability of TF.</pubmed_abstract><pubmed_abstract>We have analyzed several mathematical models that describe inhibition of the factor VIIa-tissue factor complex (VIIa-TF) by tissue factor pathway inhibitor (TFPI). At the core of these models is a common mechanism of TFPI action suggesting that only the Xa-TFPI complex is the inhibitor of the extrinsic tenase activity. However, the model based on this hypothesis could not explain well all the available experimental data. Here, we show that a good quantitative description of all experimental data could be achieved in a model that contains two more assumptions. The first assumption is based on the hypothesis originally proposed by Baugh et al. [Baugh, R.J., Broze, G.J. Jr &amp; Krishnaswamy, S. (1998) J. Biol. Chem. 273, 4378-4386], which suggests that TFPI could inhibit the enzyme-product complex Xa-VIIa-TF. The second assumption proposes an interaction between the X-VIIa-TF complex and the factor Xa-TFPI complex. Experiments to test these hypotheses are suggested.</pubmed_abstract><pubmed_title>Tissue factor pathway inhibitor: a possible mechanism of action.</pubmed_title><pubmed_title>Regulation of extrinsic pathway factor Xa formation by tissue factor pathway inhibitor.</pubmed_title><pubmed_authors>Baugh R J RJ, Broze G J GJ, Krishnaswamy S S</pubmed_authors><pubmed_authors>Panteleev Mikhail A MA, Zarnitsina Veronica I VI, Ataullakhanov Fazoil I FI</pubmed_authors></additional><is_claimable>false</is_claimable><name>Panteleev2002_TFPImechanism_schmema3</name><description>
      
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