<HashMap><database>BioModels</database><scores/><additional><submitter>Dushmantha Madushanka Haramakkara Gedara</submitter><curationStatus>Non-curated</curationStatus><modellingApproach>constraint-based model</modellingApproach><levelVersion>L3V1</levelVersion><full_dataset_link>https://www.ebi.ac.uk/biomodels/MODEL2608200001</full_dataset_link><isPrivate>false</isPrivate><repository>BioModels</repository><modelFormat>SBML</modelFormat><omics_type>Models</omics_type><tokenised_name>iErLJJL01: a genome scale metabolic model of Erwinia sp. str. LJJL01 for plastic waste upcycling and bioproduct synthesis</tokenised_name><publication_year>2026</publication_year><submissionId>MODEL2608200001</submissionId><publication_authors>Madushanka, Dushmantha, Jayakody, Lahiru N.</publication_authors><first_author>Madushanka, Dushmantha</first_author><publication>10.5281/ZENODO.22019746,
                            N/A. N/A, N/A.
                            N/A</publication><submitter_mail>dushmantha.haramakkara@siu.edu</submitter_mail><publication_doi>10.5281/ZENODO.22019746</publication_doi><submitter_affiliation>Southern Illinois University Carbondale</submitter_affiliation></additional><is_claimable>false</is_claimable><name>iErLJJL01: a genome-scale metabolic model of Erwinia sp. str. LJJL01 for plastic-waste upcycling and bioproduct synthesis</name><description>iErLJJL01 is the first genome-scale metabolic model (GEM) of Erwinia sp. str. LJJL01, a non-model Gammaproteobacterium developed as a chassis for upcycling organic waste materials and plastic-derived compounds into value-added products. The model links 3,100 reactions, 1,962 metabolites, and 1,520 genes, and is provided in SBML Level 3 Version 1 with the Flux Balance Constraints (FBC v2) package.

The reconstruction was generated with CarveMe from the strain proteome, manually curated for plastic-monomer catabolism, strain-specific biomass, and product pathways, and integrated with transcriptomic data across eight growth conditions. It reproduces 88% of experimental carbon-source growth phenotypes with zero false negatives, and scores 75.9% on MEMOTE with 100% SBO-term coverage and 99.96% of reactions mass-balanced.

The source genome is NCBI GenBank CP178576.1 (RefSeq assembly GCF_047300805.1). This archive contains the SBML model, a JSON copy for browser-based exploration in Escher-FBA, the full MEMOTE quality report, a COBRApy usage script, a user guide, and the technical development report.

Released under CC-BY-4.0. Developed by Dushmantha Madushanka and Lahiru N. Jayakody, Southern Illinois University Carbondale, with support from the NSF-funded plastic-upcycling project.</description><dates><last_modification>2026-08-22</last_modification><publication>2026-09-02</publication><submission>2026-08-20</submission></dates><accession>MODEL2608200001</accession><cross_references><doi>10.5281/ZENODO.22019746</doi></cross_references></HashMap>