{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown","Transcriptomics","Genomics","Proteomics"],"submitter":["Eun Young Kim"],"instrument_platform":["Illumina NovaSeq 6000"],"study_type":["RNA-seq of coding RNA"],"organism":["Glycine max"],"species":["Glycine max"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-14196"],"description":["Plants of soybean (Glycine max L.) cv. Daewonkong were grown until they reached the V2 stage and treated waterlogging stress, the water level to submerge the soil was maintained for 10 days, followed by a recovery time of 15 days."],"repository":["biostudies-arrayexpress"],"sample_protocol":["Library Construction - Library for RNA-sequencing was constructed by TruSeq Stranded mRNA library prep kit following the manufacturer's instruction","Sequencing - The library was sequenced with the Illumina NovaSeq 6000 platform by Macrogen Inc.","Sample Collection - Roots were collected from three replicates of control plants (con) and plants subjected to 10 days of waterlogging stress (FT), and immediately frozen in liquid nitrozen.","Sample Treatment - To treat waterlogging stress, the water level to submerge the soil was maintained for 10 days, followed by a recovery time of 15 days.","Growth Protocol - Plants of soybean were grown in plastic pots until they reached the V2 stage in an incubator [14-h light/ 10-h dark, 28'C (day)/24'C (night), humidity 60%].","Nucleic Acid Extraction - Total RNA was extracted using the RNeasy Plant Mini Kit (Qiagen, Hilden, Germany)."],"figure_sub":["Organization","MINSEQE Score","Assays and Data","MAGE-TAB Files"],"pubmed_authors":["Yo-Han Yoo","Woo-Jong Hong","Eun Young Kim"],"additional_accession":[]},"is_claimable":false,"name":"RNA-seq of soybean treated waterlogging condition","description":"Plants of soybean (Glycine max L.) cv. Daewonkong were grown until they reached the V2 stage and treated waterlogging stress, the water level to submerge the soil was maintained for 10 days, followed by a recovery time of 15 days.","dates":{"release":"2026-05-24T00:00:00Z","modification":"2026-05-24T01:00:40.424Z","creation":"2024-06-20T19:19:24.125Z"},"accession":"E-MTAB-14196","cross_references":{"ENA":["ERP161343"],"EFO":["EFO_0002944","EFO_0004170","EFO_0003789","EFO_0005518","EFO_0003738","EFO_0004184","EFO_0003969"]}}