{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Claudia Pommerenke"],"organism":["Homo sapiens"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-14737"],"description":["paired-end 2x150bp bulk RNA-seq of 18 human DSMZ neuroblastoma cell lines"],"repository":["biostudies-arrayexpress"],"sample_protocol":["Nucleic Acid Extraction - Total RNA was extracted via miRNeasy Mini Kit (Qiagen, Hilden, Germany) including DNase digestion.","Sequencing - The libraries were sequenced on NovaSeq 6000 (2x151 cycles, paired end run, 8 bp dual indices) with >30 million reads per sample.","Sample Collection - Cell lines were taken from the stock of the cell lines bank (Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures). Cell lines were authenticated by DNA profiling and cytogenetics.","Library Construction - Strand-specific (fr-first strand) mRNA-libraries were prepared with the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England Biolabs, Frankfurt am Main, Germany) and amplified."],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Data Transformation - Reads were mapped and counted via Salmon to human Gencode 37."],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["Illumina NovaSeq 6000"],"study_type":["RNA-seq of coding RNA"],"species":["Homo sapiens"],"pubmed_authors":["Claudia Pommerenke"],"additional_accession":[]},"is_claimable":false,"name":"RNA-seq of neuroblastoma cell lines","description":"paired-end 2x150bp bulk RNA-seq of 18 human DSMZ neuroblastoma cell lines","dates":{"release":"2026-05-15T00:00:00Z","modification":"2026-05-15T05:48:43.863Z","creation":"2025-01-02T16:10:16.151Z"},"accession":"E-MTAB-14737","cross_references":{"ENA":["ERP167457"],"Biostudies":["E-MTAB-14738","E-MTAB-14735","E-MTAB-14736","E-MTAB-14733"],"EFO":["EFO_0002944","EFO_0004170","EFO_0005518","EFO_0003816","EFO_0003738","EFO_0004184"]}}