<HashMap><database>biostudies-arrayexpress</database><scores/><additional><omics_type>Unknown</omics_type><omics_type>Transcriptomics</omics_type><omics_type>Genomics</omics_type><omics_type>Proteomics</omics_type><submitter>Shinkichi Ishikawa</submitter><instrument_platform>Illumina NovaSeq 6000</instrument_platform><study_type>RNA-seq of coding RNA</study_type><organism>Homo sapiens</organism><species>Homo sapiens</species><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/E-MTAB-14793</full_dataset_link><description>Human Pulmonary Alveolar Epithelial Cells (HPAEpiCs) purchased from ScienCell Research Laboratories were cultured at the air-liquid interface (ALI) for 28 days with medium containing Y-27632, A-83-01, and CHIR99021. The gene expression profile of HPAEpiCs was investigated on ALI day 0, 7, 14, 21, and 28 by RNA-seq.</description><repository>biostudies-arrayexpress</repository><sample_protocol>Nucleic Acid Extraction - Total RNA was isolated and purified using the Qiagen RNeasy Mini Kit (Qiagen).</sample_protocol><sample_protocol>Sequencing - The library was sequenced on a NovaSeq 6000 (Illumina Inc.).</sample_protocol><sample_protocol>Library Construction - A DNA library was prepared using a TruSeq Stranded mRNA LT Sample Prep Kit (Illumina Inc.).</sample_protocol><sample_protocol>Sample Collection - HPAEpiCs were cultured at the ALI for 28 days with medium containing Y-27632, A-83-01, and CHIR99021. HPAEpiCs on ALI day 0, 7, 14, 21, and 28 were washed with PBS and lysed with Lysis buffer in Qiagen RNeasy Mini Kit (Qiagen).</sample_protocol><figure_sub>Organization</figure_sub><figure_sub>MINSEQE Score</figure_sub><figure_sub>Assays and Data</figure_sub><figure_sub>MAGE-TAB Files</figure_sub><pubmed_authors>Shinkichi Ishikawa</pubmed_authors></additional><is_claimable>false</is_claimable><name>RNA-seq analysis of HPAEpiCs Cultured at the ALI</name><description>Human Pulmonary Alveolar Epithelial Cells (HPAEpiCs) purchased from ScienCell Research Laboratories were cultured at the air-liquid interface (ALI) for 28 days with medium containing Y-27632, A-83-01, and CHIR99021. The gene expression profile of HPAEpiCs was investigated on ALI day 0, 7, 14, 21, and 28 by RNA-seq.</description><dates><release>2026-01-01T00:00:00Z</release><modification>2026-01-01T02:02:03.165Z</modification><creation>2025-01-28T22:39:32.767Z</creation></dates><accession>E-MTAB-14793</accession><cross_references><ENA>ERP168713</ENA><EFO>EFO_0002944</EFO><EFO>EFO_0004170</EFO><EFO>EFO_0005518</EFO><EFO>EFO_0003738</EFO><EFO>EFO_0004184</EFO></cross_references></HashMap>