{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Assa Sherman"],"organism":["Homo sapiens"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-15038"],"description":["We used constitutive construct to OE lncVRTN, or siRNAs to induce KD of lncVRTN or lncOCT4 in hESC and examine its transcriptomic effects."],"repository":["biostudies-arrayexpress"],"sample_protocol":["Library Construction - KAPA stranded mRNA-seq kit","Sequencing - TruSeq","Nucleic Acid Extraction - Qiagen RNeasy kit","Sample Collection - Harvested using Trypsin"],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Sequence Alignment - Reads were aligned to GRCh38 using STAR","Data Transformation - No normalization performed (raw counts from STAR output)"],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["NextSeq 2000"],"study_type":["RNA-seq of total RNA"],"species":["Homo sapiens"],"pubmed_authors":["Assa Sherman"],"additional_accession":[]},"is_claimable":false,"name":"Transcriptome analysis of human embryonic stem cells (hESCs) upon lncVRTN OE or siRNA-mediated knockdown of lncVRTN or lncOCT4","description":"We used constitutive construct to OE lncVRTN, or siRNAs to induce KD of lncVRTN or lncOCT4 in hESC and examine its transcriptomic effects.","dates":{"release":"2025-12-18T00:00:00Z","modification":"2025-12-18T02:01:45.943Z","creation":"2025-04-15T13:34:58.041Z"},"accession":"E-MTAB-15038","cross_references":{"ENA":["ERP171659"],"Biostudies":["E-MTAB-15032"],"EFO":["EFO_0002944","EFO_0004170","EFO_0009653","EFO_0004917","EFO_0005518","EFO_0003816","EFO_0004184"]}}