{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"submitter":["Marek Marzec"],"instrument_platform":["Illumina NovaSeq 6000"],"study_type":["RNA-seq of coding RNA"],"organism":["Arabidopsis thaliana"],"species":["Arabidopsis thaliana"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-15051"],"description":["Arabidopsis thliana plants (WT, SL biosynthesis mutant, SL signaling mutant) were grown together on a single dish with root contact. One of the plants was mechanically wounded, and after 3 h it was checked whether it had any effect on the other plants"],"repository":["biostudies-arrayexpress"],"sample_protocol":["Sample Collection - For RNA-isolation analyses, plant tissue (shoot or root) was collected in four biological replicates, each containing tissue from 4 seedlings.","Nucleic Acid Extraction - Samples were frozen immediately in liquid nitrogen; RNA was isolated using the mirVana miRNA Isolation Kit (Sigma, catalogue number: AM1560).","Sequencing - Transcriptome sequencing was conducted by Novogene Co., LTD (Beijing, China).","Growth Protocol - For the RNAseq experiment, plants were grown on Perti dish with 1/2 MS up to 28 days. 12 plants were placed on the single Petri dish. Plants were placed in the greenhouse under a 20/18°C day/night, 16/8 photoperiod and 420 μE m−2 s−1 light intensity.","Library Construction - Preparation of RNA library was conducted by Novogene Co., LTD (Beijing, China)."],"figure_sub":["Organization","MINSEQE Score","Assays and Data","MAGE-TAB Files"],"pubmed_authors":["Marek Marzec"],"additional_accession":[]},"is_claimable":false,"name":"Role of strigolactones in mediating the wounding signal","description":"Arabidopsis thliana plants (WT, SL biosynthesis mutant, SL signaling mutant) were grown together on a single dish with root contact. One of the plants was mechanically wounded, and after 3 h it was checked whether it had any effect on the other plants","dates":{"release":"2026-08-31T00:00:00Z","modification":"2026-08-31T01:00:37.869Z","creation":"2025-04-17T10:18:34.202Z"},"accession":"E-MTAB-15051","cross_references":{"ENA":["ERP171766"],"EFO":["EFO_0002944","EFO_0004170","EFO_0003789","EFO_0005518","EFO_0003738","EFO_0004184"]}}