{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Johan Henriksson"],"organism":["mixed sample"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-15286"],"description":["This dataset holds three runs of our new Atrandi-SPC based single-cell WGS protocol, one for each lysis protocol (R1-R3 in the study)"],"repository":["biostudies-arrayexpress"],"sample_protocol":["Sample Collection - A commercial mock community was used MSA-2003","Nucleic Acid Extraction - Nucleic acid was extracted according to lysis protocols R1, R2, R3 described further in our manuscript","Sequencing - Sequencing was performed on a Novaseq X 1.5B","Library Construction - Libraries were prepared using SPCs as specified in our manuscript"],"figure_sub":["Organization","MINSEQE Score","Assays and Data","MAGE-TAB Files"],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["Illumina NovaSeq X"],"study_type":["DNA-seq"],"species":["mixed sample"],"pubmed_title":["Scalable single-cell metagenomic analysis with Bascet and Zorn"],"pubmed_authors":["Hadrien Gourlé, Iryna Yakovenko, Jyoti Verma, Julian Dicken, Florian Albrecht, Linas Mažutis, Johan Normark, Nongfei Sheng, Nicklas Strömberg, Tommy Löfstedt, Laura M. Carroll, Johan Henriksson","Laura Carroll","Johan Henriksson"],"additional_accession":[]},"is_claimable":false,"name":"Single-cell whole genome sequencing of a bacterial mock community","description":"This dataset holds three runs of our new Atrandi-SPC based single-cell WGS protocol, one for each lysis protocol (R1-R3 in the study)","dates":{"release":"2026-05-30T00:00:00Z","modification":"2026-05-30T01:01:22.735Z","creation":"2025-06-30T11:32:09.425Z"},"accession":"E-MTAB-15286","cross_references":{"ENA":["ERP174246"],"EFO":["EFO_0002944","EFO_0004170","EFO_0002693","EFO_0005518","EFO_0004184"],"doi":["10.1101/2025.06.20.660799v1"]}}