{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Lloyd Steele"],"organism":["Homo sapiens"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-15458"],"description":["We generate Visium 10x data from healthy skin (n=2) and inflamed atopic dermatitis skin (n=1). We generate Xenium 10x data from non-lesional atopic dermatitis skin (n=2) and inflamed atopic dermatitis skin (n=1). We use these datasets to locate skin fibroblast subtypes identified from scRNA-seq."],"repository":["biostudies-arrayexpress"],"sample_protocol":["Library Construction - As per 10x genomics manufacture's protocol","Sequencing - As per 10x genomics manufacture's protocol","Sample Collection - All research ethics committee and regulatory approval were in place for the collection of research samples at Newcastle and for their storage at the Newcastle Dermatology Biobank (REC reference number: 19/NE/0004)","Nucleic Acid Extraction - As per 10x genomics manufacture's protocol"],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Data Transformation - Standard Space Ranger output for 10x including gene matrices; barcodes etc"],"omics_type":["Unknown","Transcriptomics","Genomics"],"instrument_platform":["Illumina NovaSeq 6000"],"study_type":["RNA-seq of coding RNA from single cells"],"species":["Homo sapiens"],"pubmed_authors":["Lloyd Steele"],"additional_accession":[]},"is_claimable":false,"name":"Spatial localisation of human skin fibroblasts","description":"We generate Visium 10x data from healthy skin (n=2) and inflamed atopic dermatitis skin (n=1). We generate Xenium 10x data from non-lesional atopic dermatitis skin (n=2) and inflamed atopic dermatitis skin (n=1). We use these datasets to locate skin fibroblast subtypes identified from scRNA-seq.","dates":{"release":"2025-08-01T00:00:00Z","modification":"2025-08-05T22:13:57.179Z","creation":"2025-08-05T22:13:57.179Z"},"accession":"E-MTAB-15458","cross_references":{"ENA":["ERP177859"],"EFO":["EFO_0002944","EFO_0004170","EFO_0005684","EFO_0005518","EFO_0003816","EFO_0004184"]}}