{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Assa Sherman"],"organism":["Homo sapiens"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-15658"],"description":["siRNA knockdown lncVRTN and control treated hESCs were harvested 2 days post-transfection for EB formation assay. The EBs were harvested for RNA after 3 days"],"repository":["biostudies-arrayexpress"],"sample_protocol":["Library Construction - KAPA stranded mRNA-seq kit","Sequencing - TruSeq","Nucleic Acid Extraction - Qiagen RNeasy kit","Sample Collection - Harvested using Trypsin"],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Sequence Alignment - Reads were aligned to GRCh38 using STAR","Data Transformation - No normalization performed (raw counts from STAR output)"],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["NextSeq 2000"],"study_type":["RNA-seq of coding RNA"],"species":["Homo sapiens"],"pubmed_authors":["Assa Sherman"],"additional_accession":[]},"is_claimable":false,"name":"lncVRTN day 3 EBs","description":"siRNA knockdown lncVRTN and control treated hESCs were harvested 2 days post-transfection for EB formation assay. The EBs were harvested for RNA after 3 days","dates":{"release":"2025-12-18T00:00:00Z","modification":"2026-05-28T10:30:20.361Z","creation":"2025-10-03T16:13:19.495Z"},"accession":"E-MTAB-15658","cross_references":{"ENA":["ERP181012"],"Biostudies":["E-MTAB-15038"],"EFO":["EFO_0002944","EFO_0004170","EFO_0004917","EFO_0005518","EFO_0003816","EFO_0003738","EFO_0004184"]}}