<HashMap><database>biostudies-arrayexpress</database><scores/><additional><submitter>Assa Sherman</submitter><organism>Homo sapiens</organism><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/E-MTAB-15658</full_dataset_link><description>siRNA knockdown lncVRTN and control treated hESCs were harvested 2 days post-transfection for EB formation assay. The EBs were harvested for RNA after 3 days</description><repository>biostudies-arrayexpress</repository><sample_protocol>Library Construction - KAPA stranded mRNA-seq kit</sample_protocol><sample_protocol>Sequencing - TruSeq</sample_protocol><sample_protocol>Nucleic Acid Extraction - Qiagen RNeasy kit</sample_protocol><sample_protocol>Sample Collection - Harvested using Trypsin</sample_protocol><figure_sub>Organization</figure_sub><figure_sub>MINSEQE Score</figure_sub><figure_sub>Assays and Data</figure_sub><figure_sub>Processed Data</figure_sub><figure_sub>MAGE-TAB Files</figure_sub><data_protocol>Sequence Alignment - Reads were aligned to GRCh38 using STAR</data_protocol><data_protocol>Data Transformation - No normalization performed (raw counts from STAR output)</data_protocol><omics_type>Metabolomics</omics_type><omics_type>Unknown</omics_type><omics_type>Transcriptomics</omics_type><omics_type>Genomics</omics_type><omics_type>Proteomics</omics_type><instrument_platform>NextSeq 2000</instrument_platform><study_type>RNA-seq of coding RNA</study_type><species>Homo sapiens</species><pubmed_authors>Assa Sherman</pubmed_authors></additional><is_claimable>false</is_claimable><name>lncVRTN day 3 EBs</name><description>siRNA knockdown lncVRTN and control treated hESCs were harvested 2 days post-transfection for EB formation assay. The EBs were harvested for RNA after 3 days</description><dates><release>2025-12-18T00:00:00Z</release><modification>2026-05-28T10:30:20.361Z</modification><creation>2025-10-03T16:13:19.495Z</creation></dates><accession>E-MTAB-15658</accession><cross_references><ENA>ERP181012</ENA><Biostudies>E-MTAB-15038</Biostudies><EFO>EFO_0002944</EFO><EFO>EFO_0004170</EFO><EFO>EFO_0004917</EFO><EFO>EFO_0005518</EFO><EFO>EFO_0003816</EFO><EFO>EFO_0003738</EFO><EFO>EFO_0004184</EFO></cross_references></HashMap>