{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Bobak Parang"],"organism":["Homo sapiens"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-15738"],"description":["A549 cells transduced with shRNA against scr (control) or MMAB (904 or 906)."],"repository":["biostudies-arrayexpress"],"sample_protocol":["Sample Collection - Cells were infected with lentivirus containing shSCR or two hairpins against MMAB. Cells were selected with puromycin for 5 days. After selection, cells were plated in 10cm plates and after 48 hours, RNA was extracted.","Sequencing - Weill Cornell Medicine genomics core performed the nucleic acid sequencing","Growth Protocol - Cells were grown in full media with either shSCR, shMMAB#1 or shMMAB#2","Nucleic Acid Extraction - RNA extraction was done in accordance with Qiagen kit.","Library Construction - Weill Cornell Medicine genomics core constructed the library."],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Data Transformation - Data was normalized according to Weill Cornell Genomics protocol"],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["Illumina NovaSeq X"],"study_type":["RNA-seq of coding RNA"],"species":["Homo sapiens"],"pubmed_authors":["Bobak Parang"],"additional_accession":[]},"is_claimable":false,"name":"A549 MMAB knockdown","description":"A549 cells transduced with shRNA against scr (control) or MMAB (904 or 906).","dates":{"release":"2025-10-30T00:00:00Z","modification":"2026-05-27T17:36:18.615Z","creation":"2025-10-15T14:42:21.261Z"},"accession":"E-MTAB-15738","cross_references":{"ENA":["ERP182242"],"EFO":["EFO_0002944","EFO_0004170","EFO_0003789","EFO_0005518","EFO_0003816","EFO_0003738","EFO_0004184"]}}