{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Yumeng Pei"],"organism":["Mus musculus"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-15802"],"description":["we performed ATAC sequencing in KO and WT mouse-derived BMDMs after treatment with the supernatant from KPC cells."],"repository":["biostudies-arrayexpress"],"sample_protocol":["Sample Collection - we performed ATAC sequencing in KO and WT mouse-derived BMDMs after treatment with the supernatant from KPC cells","Sequencing - Using mm39 as reference.","Library Construction - The nucleic acid library construction protocol was performed according to the kit (Vazyme, TD711)","Nucleic Acid Extraction - After treatment of BMDMs, the cells were collected using kit (Vazyme, TD711)"],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Data Transformation - Raw sequencing reads were subjected to quality control using FastQC, Adapter sequences and low-quality bases were trimmed using Trimmomatic, Quality-filtered reads were aligned to the reference genome, PCR duplicates were marked and removed using samtools to eliminate technical artifacts"],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["Illumina HiSeq X"],"study_type":["ATAC-seq"],"species":["Mus musculus"],"pubmed_authors":["Yumeng Pei"],"additional_accession":[]},"is_claimable":false,"name":"ATAC seq of WT and MG53-KO cells","description":"we performed ATAC sequencing in KO and WT mouse-derived BMDMs after treatment with the supernatant from KPC cells.","dates":{"release":"2025-11-13T00:00:00Z","modification":"2026-05-27T14:12:22.803Z","creation":"2025-10-21T11:07:19.05Z"},"accession":"E-MTAB-15802","cross_references":{"ENA":["ERP182567"],"EFO":["EFO_0002944","EFO_0007045","EFO_0004170","EFO_0005518","EFO_0003816","EFO_0004184"]}}