biostudies-arrayexpressYumeng PeiMus musculushttps://www.ebi.ac.uk/biostudies/studies/E-MTAB-15802we performed ATAC sequencing in KO and WT mouse-derived BMDMs after treatment with the supernatant from KPC cells.biostudies-arrayexpressSample Collection - we performed ATAC sequencing in KO and WT mouse-derived BMDMs after treatment with the supernatant from KPC cellsSequencing - Using mm39 as reference.Library Construction - The nucleic acid library construction protocol was performed according to the kit (Vazyme, TD711)Nucleic Acid Extraction - After treatment of BMDMs, the cells were collected using kit (Vazyme, TD711)OrganizationMINSEQE ScoreAssays and DataProcessed DataMAGE-TAB FilesData Transformation - Raw sequencing reads were subjected to quality control using FastQC, Adapter sequences and low-quality bases were trimmed using Trimmomatic, Quality-filtered reads were aligned to the reference genome, PCR duplicates were marked and removed using samtools to eliminate technical artifactsMetabolomicsUnknownTranscriptomicsGenomicsProteomicsIllumina HiSeq XATAC-seqMus musculusYumeng PeifalseATAC seq of WT and MG53-KO cellswe performed ATAC sequencing in KO and WT mouse-derived BMDMs after treatment with the supernatant from KPC cells.2025-11-13T00:00:00Z2026-05-27T14:12:22.803Z2025-10-21T11:07:19.05ZE-MTAB-15802ERP182567EFO_0002944EFO_0007045EFO_0004170EFO_0005518EFO_0003816EFO_0004184