{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Gareth Palidwor"],"organism":["Drosophila melanogaster"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-15806"],"description":["The polyamines putrescine, spermidine and spermine are ubiquitous metabolites synthesized in all cells. The intracellular levels of polyamines, especially spermidine, decrease in aging. Oral spermidine supplementation has been reported to alleviate aspects of aging-related disease in animal models, including decline in learning and memory. The diverse health benefits of spermidine supplementation, often at doses that do not significantly alter spermidine levels of target organs, suggests that exogenous spermidine may have a common site of action, the gastrointestinal (GI) tract. To directly deliver spermidine to the GI tract with minimum impact on the global spermidine levels, we engineered the probiotic yeast Sacchromyces boulardii (Sb) to overproduce and secrete spermidine. We tested the effects of a spermidine-producing yeast strain (Sb576) on aging-associated learning and memory decline in an olfactory classical conditioning in Drosophila melanogaster. Feeding of newly eclosed flies of the wild-type (w1118) strain for 30 days with food supplemented with live Sb576, but not live wild-type Sb (SbWT) or free spermidine, reduced aging-associated short-term memory (STM) decline. Notably, Sb576 supplementation, but not SbWT or spermidine supplementation, of either young flies or old flies for only three days also enhanced STM without affecting locomotive ability. Furthermore, we showed that Sb576 supplementation also significantly reduced aging-associated STM decline in Dh31R, a mutant strain lacking the diuretic hormone 31 receptor, which exhibits compromised learning and memory. These results demonstrate that in situ production of spermidine by a synthetic biotic yeast in the GI tract can enhance STM, and further suggest a mechanism involving the gut-brain axis."],"repository":["biostudies-arrayexpress"],"sample_protocol":["Library Construction - NGS libraries were prepared with the Stranded mRNA library prep kit (Illumina) using 400 ng of total RNA input.","Sample Collection - To eliminate/reduce yeast (and yeast RNA) in the intestine, flies were transferred to bottles containing filter paper saturated with 5% glucose in water for four hours. The flies were anesthetized by CO2 and the entire intestine excluding the crop was excised in PBS. Isolated guts were then placed into Eppendorf tubes.","Nucleic Acid Extraction - Total RNA was isolated from 30 female guts using Qiagen’s RNeasy Plus kit. RNA sample quality assessment was performed with the Fragment Analyzer Standard Sensitivity RNA assay (Agilent) and concentration measured with the Qubit 3.0 HS RNA assay (Thermo).","Sequencing - Sequencing was performed with the Nextseq 2000 P1 100 cycle flow cell (Illumina)."],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Data Transformation - Since no biological replicates were performed, fold change estimates between samples were generated using GFOLD to compare STAR/salmon pseudocount values.","Sequence Alignment - FASTQ sequencing file reads were aligned to the D. melanogaster genome BDGP6.46 genome, Ensembl transcriptome 59 using the nf-core/rnaseq pipeline version 3.14.0."],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["NextSeq 2000"],"study_type":["RNA-seq of coding RNA"],"species":["Drosophila melanogaster"],"pubmed_authors":["Gareth Palidwor"],"additional_accession":[]},"is_claimable":false,"name":"Engineered spermidine-secreting Saccharomyces boulardii enhances olfactory memory in Drosophila melanogaster","description":"The polyamines putrescine, spermidine and spermine are ubiquitous metabolites synthesized in all cells. The intracellular levels of polyamines, especially spermidine, decrease in aging. Oral spermidine supplementation has been reported to alleviate aspects of aging-related disease in animal models, including decline in learning and memory. The diverse health benefits of spermidine supplementation, often at doses that do not significantly alter spermidine levels of target organs, suggests that exogenous spermidine may have a common site of action, the gastrointestinal (GI) tract. To directly deliver spermidine to the GI tract with minimum impact on the global spermidine levels, we engineered the probiotic yeast Sacchromyces boulardii (Sb) to overproduce and secrete spermidine. We tested the effects of a spermidine-producing yeast strain (Sb576) on aging-associated learning and memory decline in an olfactory classical conditioning in Drosophila melanogaster. Feeding of newly eclosed flies of the wild-type (w1118) strain for 30 days with food supplemented with live Sb576, but not live wild-type Sb (SbWT) or free spermidine, reduced aging-associated short-term memory (STM) decline. Notably, Sb576 supplementation, but not SbWT or spermidine supplementation, of either young flies or old flies for only three days also enhanced STM without affecting locomotive ability. Furthermore, we showed that Sb576 supplementation also significantly reduced aging-associated STM decline in Dh31R, a mutant strain lacking the diuretic hormone 31 receptor, which exhibits compromised learning and memory. These results demonstrate that in situ production of spermidine by a synthetic biotic yeast in the GI tract can enhance STM, and further suggest a mechanism involving the gut-brain axis.","dates":{"release":"2025-10-22T00:00:00Z","modification":"2026-05-30T17:15:18.925Z","creation":"2025-10-21T15:31:58.493Z"},"accession":"E-MTAB-15806","cross_references":{"ENA":["ERP182591"],"EFO":["EFO_0002944","EFO_0004170","EFO_0004917","EFO_0005518","EFO_0003816","EFO_0003738","EFO_0004184"]}}