{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Conor Templeton"],"organism":["Homo sapiens"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-16046"],"description":["Analysis of sentaxin binding sites within HPV 31 positive CIN 612 cells using chromatin immunoprecipitation assays"],"repository":["biostudies-arrayexpress"],"sample_protocol":["Sample Collection - CIN 612 cells were washed with versene to remove J2 feeder cells before being scraped and harvested.","Library Construction - Samples were processed by the NU-seq core facilities, who conducted both the library preparation and the sequencing.","Sequencing - Samples were processed by the NU-seq core facilities, who conducted both the library preparation and the sequencing.","Nucleic Acid Extraction - Phenol chloroform extractions were performed followed by either immunoprecipitating chromatin bound to senataxin or leaving as an input control."],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Data Transformation - NU-seq performed the initial bioinformatics taking reads and mapping them to reference genome using Bowtie2. Downstream analysis used Galaxy Open Source software to generate bigwig files using BamCompare (Galaxy Version 3.5.4+galaxy0)."],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["NextSeq 500"],"study_type":["ChIP-seq"],"species":["Homo sapiens"],"pubmed_authors":["Conor Templeton","Laimonis Laimins"],"additional_accession":[]},"is_claimable":false,"name":"Chromatin immunoprecipitation sequencing of senataxin binding within CIN 612 cells","description":"Analysis of sentaxin binding sites within HPV 31 positive CIN 612 cells using chromatin immunoprecipitation assays","dates":{"release":"2025-12-05T00:00:00Z","modification":"2026-05-27T05:01:11.754Z","creation":"2025-11-13T15:15:28.879Z"},"accession":"E-MTAB-16046","cross_references":{"ENA":["ERP184012"],"Biostudies":["E-MTAB-15997"],"EFO":["EFO_0002944","EFO_0004170","EFO_0002692","EFO_0005518","EFO_0003816","EFO_0004184"]}}