{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Kohei Kumegawa"],"organism":["Homo sapiens"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-16178"],"description":["scRNA-seq from the PDO established from liver metastases after PDO transplantation into mice"],"repository":["biostudies-arrayexpress"],"sample_protocol":["Sample Collection - Organoids were collected and single cells were prepared in TrypLE.","Sequencing - Fastq files were generated by RTA in Illumina NextSeq 550.","Nucleic Acid Extraction - 10x Genomics Chromium was used for single cell capture and cDNA preparations according to the Single Cell 3' v3 Protocol recommended by the manufacturer.","Library Construction - 10x Genomics Chromium was used for single cell capture and cDNA preparations according to the Single Cell 3' v3 Protocol recommended by the manufacturer."],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Data Transformation - 10X CellRanger was used for generating precessed data."],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["NextSeq 550"],"study_type":["RNA-seq of coding RNA from single cells"],"species":["Homo sapiens"],"pubmed_authors":["Kohei Kumegawa"],"additional_accession":[]},"is_claimable":false,"name":"Single-cell RNA-seq analysis of patient derived organoids from colorectal cancers (M51_3LM)","description":"scRNA-seq from the PDO established from liver metastases after PDO transplantation into mice","dates":{"release":"2025-11-20T00:00:00Z","modification":"2026-05-27T16:52:25.022Z","creation":"2025-11-18T22:41:37.941Z"},"accession":"E-MTAB-16178","cross_references":{"ENA":["ERP185270"],"EFO":["EFO_0002944","EFO_0004170","EFO_0005684","EFO_0005518","EFO_0003816","EFO_0004184"]}}