biostudies-arrayexpressKohei KumegawaHomo sapienshttps://www.ebi.ac.uk/biostudies/studies/E-MTAB-16178scRNA-seq from the PDO established from liver metastases after PDO transplantation into micebiostudies-arrayexpressSample Collection - Organoids were collected and single cells were prepared in TrypLE.Sequencing - Fastq files were generated by RTA in Illumina NextSeq 550.Nucleic Acid Extraction - 10x Genomics Chromium was used for single cell capture and cDNA preparations according to the Single Cell 3' v3 Protocol recommended by the manufacturer.Library Construction - 10x Genomics Chromium was used for single cell capture and cDNA preparations according to the Single Cell 3' v3 Protocol recommended by the manufacturer.OrganizationMINSEQE ScoreAssays and DataProcessed DataMAGE-TAB FilesData Transformation - 10X CellRanger was used for generating precessed data.MetabolomicsUnknownTranscriptomicsGenomicsProteomicsNextSeq 550RNA-seq of coding RNA from single cellsHomo sapiensKohei KumegawafalseSingle-cell RNA-seq analysis of patient derived organoids from colorectal cancers (M51_3LM)scRNA-seq from the PDO established from liver metastases after PDO transplantation into mice2025-11-20T00:00:00Z2026-05-27T16:52:25.022Z2025-11-18T22:41:37.941ZE-MTAB-16178ERP185270EFO_0002944EFO_0004170EFO_0005684EFO_0005518EFO_0003816EFO_0004184