{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Javier Serrania"],"organism":["Sinorhizobium meliloti"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-16345"],"description":["SNP-search in S. meliloti Rm2011 rhbE, rhtA and flaX deletion mutants"],"repository":["biostudies-arrayexpress"],"sample_protocol":["Nucleic Acid Extraction - S. meliloti gDNA frommutant strains was extracted using a Blood & Cell Culture DNA Kit (Qiagen)","Sequencing - Oxford Nanopore sequencing was performed by the company Plasmidsaurus.","Library Construction - The DNA library for Oxford Nanopore sequencing was produced by the company Plasmidsaurus.","Sample Collection - For genomic DNA (gDNA) isolation, S. meliloti cell cultures were grown overnight in TY with appropriate antibiotics until they reached an exponential phase, with an OD600 between 0.4 and 1."],"figure_sub":["Organization","MINSEQE Score","Assays and Data","Processed Data","MAGE-TAB Files"],"data_protocol":["Data Transformation - Read mapping to the Sm2011 GMI11495 reference genome and comparisons for detection of sequence variants were carried out using CLC Genomic Workbench 24.0.1 (Tools: Map Long Reads to Reference 1.2, Basic Variant Detector 2.6 - applied thresholds: Coverage >= 10, Count >= 6, Frequency >= 75%)"],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["PromethION"],"study_type":["DNA-seq"],"species":["Sinorhizobium meliloti"],"pubmed_authors":["Javier Serrania"],"additional_accession":[]},"is_claimable":false,"name":"Rhizobial motility preference in root colonization of Medicago truncatula","description":"SNP-search in S. meliloti Rm2011 rhbE, rhtA and flaX deletion mutants","dates":{"release":"2026-01-08T00:00:00Z","modification":"2026-05-27T13:06:33.592Z","creation":"2025-12-01T19:10:26.884Z"},"accession":"E-MTAB-16345","cross_references":{"ENA":["ERP185915"],"EFO":["EFO_0002944","EFO_0004170","EFO_0002693","EFO_0005518","EFO_0003816","EFO_0004184"]}}