<HashMap><database>biostudies-arrayexpress</database><scores/><additional><submitter>Javier Serrania</submitter><organism>Sinorhizobium meliloti</organism><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/E-MTAB-16345</full_dataset_link><description>SNP-search in S. meliloti Rm2011 rhbE, rhtA and flaX deletion mutants</description><repository>biostudies-arrayexpress</repository><sample_protocol>Nucleic Acid Extraction - S. meliloti gDNA frommutant strains was extracted using a Blood &amp; Cell Culture DNA Kit (Qiagen)</sample_protocol><sample_protocol>Sequencing - Oxford Nanopore sequencing was performed by the company Plasmidsaurus.</sample_protocol><sample_protocol>Library Construction - The DNA library for Oxford Nanopore sequencing was produced by the company Plasmidsaurus.</sample_protocol><sample_protocol>Sample Collection - For genomic DNA (gDNA) isolation, S. meliloti cell cultures were grown overnight in TY with appropriate antibiotics until they reached an exponential phase, with an OD600 between 0.4 and 1.</sample_protocol><figure_sub>Organization</figure_sub><figure_sub>MINSEQE Score</figure_sub><figure_sub>Assays and Data</figure_sub><figure_sub>Processed Data</figure_sub><figure_sub>MAGE-TAB Files</figure_sub><data_protocol>Data Transformation - Read mapping to the Sm2011 GMI11495 reference genome and comparisons for detection of sequence variants were carried out using CLC Genomic Workbench 24.0.1 (Tools: Map Long Reads to Reference 1.2, Basic Variant Detector 2.6 - applied thresholds: Coverage >= 10, Count >= 6, Frequency >= 75%)</data_protocol><omics_type>Metabolomics</omics_type><omics_type>Unknown</omics_type><omics_type>Transcriptomics</omics_type><omics_type>Genomics</omics_type><omics_type>Proteomics</omics_type><instrument_platform>PromethION</instrument_platform><study_type>DNA-seq</study_type><species>Sinorhizobium meliloti</species><pubmed_authors>Javier Serrania</pubmed_authors></additional><is_claimable>false</is_claimable><name>Rhizobial motility preference in root colonization of Medicago truncatula</name><description>SNP-search in S. meliloti Rm2011 rhbE, rhtA and flaX deletion mutants</description><dates><release>2026-01-08T00:00:00Z</release><modification>2026-05-27T13:06:33.592Z</modification><creation>2025-12-01T19:10:26.884Z</creation></dates><accession>E-MTAB-16345</accession><cross_references><ENA>ERP185915</ENA><EFO>EFO_0002944</EFO><EFO>EFO_0004170</EFO><EFO>EFO_0002693</EFO><EFO>EFO_0005518</EFO><EFO>EFO_0003816</EFO><EFO>EFO_0004184</EFO></cross_references></HashMap>