{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown","Transcriptomics","Genomics","Proteomics"],"submitter":["Martin Simon"],"instrument_platform":["Illumina NovaSeq 6000","-"],"study_type":["RNA-seq of total RNA"],"organism":["Homo sapiens"],"species":["Homo sapiens"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-16823"],"description":["HepG2 cells were transfected with Gapmers against the NEAT1 ncRNA. THe experimental design inlcudes a negative control  by scrabled Gapmers,  and combination of Gapmer no.1 and no.3.  Total RNA was sequenced after Ribo Depletion."],"repository":["biostudies-arrayexpress"],"sample_protocol":["Sample Collection - Gapmers were applied for NEAT1 Knokout, application of scambled GAPmers serves as a negative control","Library Construction - Ribosomal RNA was depleted and Illumina comaptible libraries generated","Sequencing - Samles were sequenced on a Nova Seq 6000S4 lane","Nucleic Acid Extraction - RNA was isolated with Trizol and DNAse digested"],"figure_sub":["Organization","MINSEQE Score","Assays and Data","MAGE-TAB Files"],"pubmed_authors":["Martin Simon"],"additional_accession":[]},"is_claimable":false,"name":"Knockdown of NEAT1 in HepG2 Cells","description":"HepG2 cells were transfected with Gapmers against the NEAT1 ncRNA. THe experimental design inlcudes a negative control  by scrabled Gapmers,  and combination of Gapmer no.1 and no.3.  Total RNA was sequenced after Ribo Depletion.","dates":{"release":"2026-04-15T00:00:00Z","modification":"2026-04-17T01:01:31.611Z","creation":"2026-03-30T12:15:12.522Z"},"accession":"E-MTAB-16823","cross_references":{"ENA":["ERP191548"],"EFO":["EFO_0002944","EFO_0004170","EFO_0009653","EFO_0005518","EFO_0004184"]}}