{"database":"biostudies-arrayexpress","file_versions":[],"scores":null,"additional":{"submitter":["Chloe Girard"],"organism":["Arabidopsis thaliana"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/E-MTAB-16988"],"description":["This experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes.  In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information.  In this specific population I, the F2 plants sequenced come from a cross between an F1 7RV498xCol as female and an F1 7RV498xCt as male. Other populations can be found linked to this submission."],"repository":["biostudies-arrayexpress"],"sample_protocol":["Sample Collection - Leaves were removed from plants and stored at -80 C until DNA extraction","Growth Protocol - Greenhouse supplemented with additional light. Plants grown in the greenhouse (16 h day/8 h night) for 3 weeks and 4 days in the dark","Library Construction - TPase-based DNA library (>95 samples)","Sequencing - Illumina NextSeq 2000","Nucleic Acid Extraction - NucleoMag Plant Kit (Macherey and Nagel, P/O 744400.4) on a robotic device (KingFisher, Thermo)"],"figure_sub":["Organization","MINSEQE Score","Assays and Data","MAGE-TAB Files"],"omics_type":["Metabolomics","Unknown","Transcriptomics","Genomics","Proteomics"],"instrument_platform":["NextSeq 2000"],"study_type":["genotyping by high throughput sequencing"],"species":["Arabidopsis thaliana"],"pubmed_title":["Polymorphism can extensively reshape the genome-wide crossover landscape in Arabidopsis thaliana"],"pubmed_authors":["Benoît Madec, Maëla Sémery, Qichao Lian, Mohamad Yassine, Loïse Léonard-Moniot, Éric Espagne, Sophie Piquerez and Chloé Girard","Chloe Girard"],"additional_accession":[]},"is_claimable":false,"name":"gDNA sequencing for population I from Madec et al, 2026 (progeny from 7RV498xCol-EMS F1 crossed with 7RV498xCt-EMS)","description":"This experiment aims at analyzing crossover distribution genome-wide in the plant Arabidopis thaliana in response to varying patterns of polymorphism across all five chromosomes.  In the publication (Madec et al, 2026), two different Recombinant Inbred Lines were used : 7RV168 and 7RV498, from a Columbia-0xCatania-1 (Col-0xCt-1) population (from Simon et al., 2008). Each were backcrossed to EMS treated Col-0 and Ct-1 to produce F1 plants. F1 plants were crossed as female or male to each other to produce F2 plants, which were sequenced. Refer to Figure 1 of Madec et al, 2026 for more information.  In this specific population I, the F2 plants sequenced come from a cross between an F1 7RV498xCol as female and an F1 7RV498xCt as male. Other populations can be found linked to this submission.","dates":{"release":"2026-07-31T00:00:00Z","modification":"2026-07-31T13:26:31.84Z","creation":"2026-05-01T10:50:02.876Z"},"accession":"E-MTAB-16988","cross_references":{"ENA":["ERP192919"],"Biostudies":["E-MTAB-15108"],"EFO":["EFO_0002944","EFO_0004170","EFO_0003789","EFO_0002771","EFO_0005518","EFO_0004184"]}}