<HashMap><database>biostudies-literature</database><scores/><additional><submitter>Casanovas-Massana A</submitter><funding>National Institute of Allergy and Infectious Diseases</funding><funding>NIAID NIH HHS</funding><funding>FIC NIH HHS</funding><pagination>1450-1456</pagination><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/S-EPMC10197099</full_dataset_link><repository>biostudies-literature</repository><omics_type>Unknown</omics_type><volume>70(3)</volume><pubmed_abstract>Four spirochetes (F1&lt;sup>T&lt;/sup>, B21, Yale&lt;sup>T&lt;/sup> and AMB6-RJ) were isolated from environmental sources: F1&lt;sup>T&lt;/sup> and B21 from soils of an urban slum community in Salvador (Brazil), Yale&lt;sup>T&lt;/sup> from river water in New Haven, Connecticut (USA) and AMB6-RJ from a pond in a horse farm in Rio de Janeiro (Brazil). Isolates were helix-shaped, aerobic, highly motile and non-virulent in a hamster model of infection. Draft genomes of the strains were obtained and analysed to determine the relatedness to other species of the genus &lt;i>Leptospira&lt;/i>. The analysis of 498 core genes showed that strains F1&lt;sup>T&lt;/sup>/B21 and Yale&lt;sup>T&lt;/sup>/AMB6-RJ formed two distinct phylogenetic clades within the 'Pathogens' group (group I). The average nucleotide identity (ANI) values of strains F1&lt;sup>T&lt;/sup>/B21 and Yale&lt;sup>T&lt;/sup>/AMB6-RJ to other previously described &lt;i>Leptospira&lt;/i> species were below &lt;84 % and &lt;82 %, respectively, which confirmed that these isolates should be classified as representatives of two novel species. Therefore, we propose &lt;i>Leptospirayasudae&lt;/i> sp. nov. and &lt;i>Leptospirastimsonii&lt;/i> sp. nov. as new species in the genus &lt;i>Leptospira&lt;/i>. The type strains are F1&lt;sup>T&lt;/sup> (=ATCC-TSD-163=KIT0259=CLEP00287) and Yale&lt;sup>T&lt;/sup> (=ATCC-TDS-162=KIT0258=CLEP00288), respectively.</pubmed_abstract><journal>International journal of systematic and evolutionary microbiology</journal><pubmed_title>&lt;i>Leptospira yasudae&lt;/i> sp. nov. and &lt;i>Leptospira stimsonii&lt;/i> sp. nov., two new species of the pathogenic group isolated from environmental sources.</pubmed_title><pmcid>PMC10197099</pmcid><funding_grant_id>R25 TW009338</funding_grant_id><funding_grant_id>R01 AI121207</funding_grant_id><funding_grant_id>U01 AI088752</funding_grant_id><funding_grant_id>D43 TW010540</funding_grant_id><funding_grant_id>R01 AI052473</funding_grant_id><funding_grant_id>R01 TW009504</funding_grant_id><pubmed_authors>Hacker KP</pubmed_authors><pubmed_authors>Medeiros MA</pubmed_authors><pubmed_authors>Hamond C</pubmed_authors><pubmed_authors>de Oliveira D</pubmed_authors><pubmed_authors>Casanovas-Massana A</pubmed_authors><pubmed_authors>Ko AI</pubmed_authors><pubmed_authors>Reis MG</pubmed_authors><pubmed_authors>Wunder EA</pubmed_authors><pubmed_authors>Costa F</pubmed_authors><pubmed_authors>Santos LA</pubmed_authors><pubmed_authors>Balassiano I</pubmed_authors></additional><is_claimable>false</is_claimable><name>&lt;i>Leptospira yasudae&lt;/i> sp. nov. and &lt;i>Leptospira stimsonii&lt;/i> sp. nov., two new species of the pathogenic group isolated from environmental sources.</name><description>Four spirochetes (F1&lt;sup>T&lt;/sup>, B21, Yale&lt;sup>T&lt;/sup> and AMB6-RJ) were isolated from environmental sources: F1&lt;sup>T&lt;/sup> and B21 from soils of an urban slum community in Salvador (Brazil), Yale&lt;sup>T&lt;/sup> from river water in New Haven, Connecticut (USA) and AMB6-RJ from a pond in a horse farm in Rio de Janeiro (Brazil). Isolates were helix-shaped, aerobic, highly motile and non-virulent in a hamster model of infection. Draft genomes of the strains were obtained and analysed to determine the relatedness to other species of the genus &lt;i>Leptospira&lt;/i>. The analysis of 498 core genes showed that strains F1&lt;sup>T&lt;/sup>/B21 and Yale&lt;sup>T&lt;/sup>/AMB6-RJ formed two distinct phylogenetic clades within the 'Pathogens' group (group I). The average nucleotide identity (ANI) values of strains F1&lt;sup>T&lt;/sup>/B21 and Yale&lt;sup>T&lt;/sup>/AMB6-RJ to other previously described &lt;i>Leptospira&lt;/i> species were below &lt;84 % and &lt;82 %, respectively, which confirmed that these isolates should be classified as representatives of two novel species. Therefore, we propose &lt;i>Leptospirayasudae&lt;/i> sp. nov. and &lt;i>Leptospirastimsonii&lt;/i> sp. nov. as new species in the genus &lt;i>Leptospira&lt;/i>. The type strains are F1&lt;sup>T&lt;/sup> (=ATCC-TSD-163=KIT0259=CLEP00287) and Yale&lt;sup>T&lt;/sup> (=ATCC-TDS-162=KIT0258=CLEP00288), respectively.</description><dates><release>2020-01-01T00:00:00Z</release><publication>2020 Mar</publication><modification>2026-05-28T08:22:29.532Z</modification><creation>2025-04-05T21:08:31.44Z</creation></dates><accession>S-EPMC10197099</accession><cross_references><pubmed>31184568</pubmed><doi>10.1099/ijsem.0.003480</doi></cross_references></HashMap>