{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Wang Y"],"funding":["RESAS","Biotechnology and Biological Sciences Research Council"],"pagination":["uhad211"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC10681002"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["10(11)"],"pubmed_abstract":["Potato is the third most important food crop in the world. Diverse pathogens threaten sustainable crop production but can be controlled, in many cases, through the deployment of disease resistance genes belonging to the family of nucleotide-binding, leucine-rich-repeat (NLR) genes. To identify effective disease resistance genes in established varieties, we have successfully established SMRT-AgRenSeq in tetraploid potatoes and have further enhanced the methodology by including dRenSeq in an approach that we term SMR-AgRenSeq-d. The inclusion of dRenSeq enables the filtering of candidates after the association analysis by establishing a presence/absence matrix across resistant and susceptible varieties that is translated into an F1 score. Using a SMRT-RenSeq-based sequence representation of "],"journal":["Horticulture research"],"pubmed_title":["SMRT-AgRenSeq-d in potato (<i>Solanum tuberosum</i>) as a method to identify candidates for the nematode resistance Gpa5."],"pmcid":["PMC10681002"],"funding_grant_id":["BB/X019683/1","BB/L008025/1","BB/K018299/1","JHI-B1-1","UNC - JHI","PCN 2021-26","BB/S019669/1","UNC - BioSS","JHI-B1-4","BB/X009068/1","BB/S015663/1"],"pubmed_authors":["Adams TM","Li J","Neugebauer K","Cheung YW","Bayer M","Todd DT","Oome S","Young V","Hein I","Harrower B","Armstrong MR","Brown LH","Wang X","Wang Y","Kaur A"],"additional_accession":[]},"is_claimable":false,"name":"SMRT-AgRenSeq-d in potato (<i>Solanum tuberosum</i>) as a method to identify candidates for the nematode resistance Gpa5.","description":"Potato is the third most important food crop in the world. Diverse pathogens threaten sustainable crop production but can be controlled, in many cases, through the deployment of disease resistance genes belonging to the family of nucleotide-binding, leucine-rich-repeat (NLR) genes. To identify effective disease resistance genes in established varieties, we have successfully established SMRT-AgRenSeq in tetraploid potatoes and have further enhanced the methodology by including dRenSeq in an approach that we term SMR-AgRenSeq-d. The inclusion of dRenSeq enables the filtering of candidates after the association analysis by establishing a presence/absence matrix across resistant and susceptible varieties that is translated into an F1 score. Using a SMRT-RenSeq-based sequence representation of ","dates":{"release":"2023-01-01T00:00:00Z","publication":"2023 Nov","modification":"2026-06-26T03:24:28.125Z","creation":"2025-02-19T00:38:46.06Z"},"accession":"S-EPMC10681002","cross_references":{"pubmed":["38023472"],"doi":["10.1093/hr/uhad211"]}}