{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["63(23)"],"submitter":["Skanberg R"],"funding":["Knut och Alice Wallenbergs Stiftelse","Swedish e-Science Research Centre"],"pubmed_abstract":["The typical workflow in molecular dynamics (MD) analysis requires several separate tools, often resulting in a lack of synergy and interaction between the individual analysis steps. This article presents VIAMD, an application designed to address this issue by integrating a 3D visualization of molecular trajectories with flexible analysis components. VIAMD uses an interactive scripting interface, allowing for property definition and evaluation. The application provides context-aware suggestions and expression feedback through information and visualizations. The user-defined properties can be explored and analyzed through the various components. This enables correlation with spatial conformations, statistical analysis of distributions, and powerful aggregation of multidimensional properties "],"journal":["Journal of chemical information and modeling"],"pagination":["7382-7391"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC10716899"],"repository":["biostudies-literature"],"pubmed_title":["VIAMD: a Software for Visual Interactive Analysis of Molecular Dynamics."],"pmcid":["PMC10716899"],"pubmed_authors":["Skanberg R","Linares M","Hotz I","Ynnerman A"],"additional_accession":[]},"is_claimable":false,"name":"VIAMD: a Software for Visual Interactive Analysis of Molecular Dynamics.","description":"The typical workflow in molecular dynamics (MD) analysis requires several separate tools, often resulting in a lack of synergy and interaction between the individual analysis steps. This article presents VIAMD, an application designed to address this issue by integrating a 3D visualization of molecular trajectories with flexible analysis components. VIAMD uses an interactive scripting interface, allowing for property definition and evaluation. The application provides context-aware suggestions and expression feedback through information and visualizations. The user-defined properties can be explored and analyzed through the various components. This enables correlation with spatial conformations, statistical analysis of distributions, and powerful aggregation of multidimensional properties ","dates":{"release":"2023-01-01T00:00:00Z","publication":"2023 Dec","modification":"2026-05-28T15:35:58.07Z","creation":"2025-04-04T21:21:13.963Z"},"accession":"S-EPMC10716899","cross_references":{"pubmed":["38011026"],"doi":["10.1021/acs.jcim.3c01033"]}}