biostudies-literatureShi YStartup Funding of Taizhou University for the Biomass Polysaccharide Metabolism InstituteBasic Public Welfare Research Project of Zhejiang Province263https://www.ebi.ac.uk/biostudies/studies/S-EPMC10970223biostudies-literatureUnknown15(3)<i>Lindera aggregata</i> is a species of the Lauraceae family, which has important medicinal, economic and ornamental values. In this study, we sequenced, assembled and annotated the chloroplast genome of <i>L. aggregata</i> and reannotated and corrected eight unverified annotations in the same genus. The chloroplast genomes taxa from Lindera and from different genera of Lauraceae were compared and analyzed, and their phylogenetic relationship and divergence time were speculated. All the 36 chloroplast genomes had typical quadripartite structures that ranged from 150,749 to 154,736 bp in total length. These genomes encoded 111-112 unique genes, including 78-79 protein-coding genes, 29-30 tRNA and 4 rRNA. Furthermore, there were 78-97 SSRs loci in these genomes, in which mononucleotide repeGenesComparative Analysis of Chloroplast Genomes of "Tiantai Wu-Yao" (<i>Lindera aggregata</i>) and Taxa of the Same Genus and Different Genera.PMC10970223LGN22C020001T20231801002Jiang JLi XChen ZZeng WShi YfalseComparative Analysis of Chloroplast Genomes of "Tiantai Wu-Yao" (<i>Lindera aggregata</i>) and Taxa of the Same Genus and Different Genera.<i>Lindera aggregata</i> is a species of the Lauraceae family, which has important medicinal, economic and ornamental values. In this study, we sequenced, assembled and annotated the chloroplast genome of <i>L. aggregata</i> and reannotated and corrected eight unverified annotations in the same genus. The chloroplast genomes taxa from Lindera and from different genera of Lauraceae were compared and analyzed, and their phylogenetic relationship and divergence time were speculated. All the 36 chloroplast genomes had typical quadripartite structures that ranged from 150,749 to 154,736 bp in total length. These genomes encoded 111-112 unique genes, including 78-79 protein-coding genes, 29-30 tRNA and 4 rRNA. Furthermore, there were 78-97 SSRs loci in these genomes, in which mononucleotide repe2024-01-01T00:00:00Z2024 Feb2025-04-04T23:52:38.773Z2025-04-04T23:52:38.773ZS-EPMC109702233854032210.3390/genes15030263