{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["15"],"submitter":["Deng A"],"pubmed_abstract":["At present, it is widely believed that a 95-96% average nucleotide identity (ANI) value is equivalent to a 70% digital DNA-DNA hybridization (dDDH) value in the prokaryotic taxonomy. However, in the present study, comparative genome analysis of 29 pairs of <i>Amycolatopsis</i> type strains revealed that a 70% dDDH value did not correspond to a 95-96% ANI based on the MuMmer ultra-rapid aligning tool (ANIm) but approximately corresponded to a 96.6% ANIm value in the genus <i>Amycolatopsis</i>. Based on this corresponding relationship, phenotypic and chemotaxonomical characteristics, as well as phylogenetic analysis, an actinobacterial strain HUAS 11-8<sup>T</sup> isolated from the rhizosphere soil of <i>Cynara scolymus</i>, was subjected to a polyphasic taxonomic characterization. Based on "],"journal":["Frontiers in microbiology"],"pagination":["1359021"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11056570"],"repository":["biostudies-literature"],"pubmed_title":["New insights into the relationship between the average nucleotide identity and the digital DNA-DNA hybridization values in the genus <i>Amycolatopsis</i> and <i>Amycolatopsis cynarae</i> sp. nov., a novel actinobacterium from the rhizosphere soil of <i>Cynara scolymus</i>, and proposal of <i>Amycolatopsis niigatensis</i> as a synonym of <i>Amycolatopsis echigonensis</i> based on comparative genomic analysis."],"pmcid":["PMC11056570"],"pubmed_authors":["Zheng Y","Mo P","Deng A","Gao J","Fu L","Tang T"],"additional_accession":[]},"is_claimable":false,"name":"New insights into the relationship between the average nucleotide identity and the digital DNA-DNA hybridization values in the genus <i>Amycolatopsis</i> and <i>Amycolatopsis cynarae</i> sp. nov., a novel actinobacterium from the rhizosphere soil of <i>Cynara scolymus</i>, and proposal of <i>Amycolatopsis niigatensis</i> as a synonym of <i>Amycolatopsis echigonensis</i> based on comparative genomic analysis.","description":"At present, it is widely believed that a 95-96% average nucleotide identity (ANI) value is equivalent to a 70% digital DNA-DNA hybridization (dDDH) value in the prokaryotic taxonomy. However, in the present study, comparative genome analysis of 29 pairs of <i>Amycolatopsis</i> type strains revealed that a 70% dDDH value did not correspond to a 95-96% ANI based on the MuMmer ultra-rapid aligning tool (ANIm) but approximately corresponded to a 96.6% ANIm value in the genus <i>Amycolatopsis</i>. Based on this corresponding relationship, phenotypic and chemotaxonomical characteristics, as well as phylogenetic analysis, an actinobacterial strain HUAS 11-8<sup>T</sup> isolated from the rhizosphere soil of <i>Cynara scolymus</i>, was subjected to a polyphasic taxonomic characterization. Based on ","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024","modification":"2026-04-30T21:22:01.732Z","creation":"2026-04-07T16:21:28.507Z"},"accession":"S-EPMC11056570","cross_references":{"pubmed":["38686110"],"doi":["10.3389/fmicb.2024.1359021"]}}