{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["11(1)"],"submitter":["Jensen RO"],"funding":["DOE | SC | Biological and Environmental Research","U.S. Department of Energy (DOE), Office of Science (SC), Office of Biological and Environmental Research"],"pubmed_abstract":["The genus Clostridium is a large and diverse group within the Bacillota (formerly Firmicutes), whose members can encode useful complex traits such as solvent production, gas-fermentation, and lignocellulose breakdown. We describe 270 genome sequences of solventogenic clostridia from a comprehensive industrial strain collection assembled by Professor David Jones that includes 194 C. beijerinckii, 57 C. saccharobutylicum, 4 C. saccharoperbutylacetonicum, 5 C. butyricum, 7 C. acetobutylicum, and 3 C. tetanomorphum genomes. We report methods, analyses and characterization for phylogeny, key attributes, core biosynthetic genes, secondary metabolites, plasmids, prophage/CRISPR diversity, cellulosomes and quorum sensing for the 6 species. The expanded genomic data described here will facilitate e"],"journal":["Scientific data"],"pagination":["432"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11063209"],"repository":["biostudies-literature"],"pubmed_title":["Phylogenomics and genetic analysis of solvent-producing Clostridium species."],"pmcid":["PMC11063209"],"pubmed_authors":["Reynoso V","De Tissera S","Brown SD","Kopke M","Woyke T","Reddy TBK","Mizrahi I","Nagaraju S","Morais S","Mouncey NJ","Shapiro N","Roux S","Udwary D","Klingeman DM","Mitchell WP","Winkler J","Schulz F","Jewett MC","Utturkar SM","Jones DT","Ivanova N","Bayer EA","Jensen RO","Simpson SD"],"additional_accession":[]},"is_claimable":false,"name":"Phylogenomics and genetic analysis of solvent-producing Clostridium species.","description":"The genus Clostridium is a large and diverse group within the Bacillota (formerly Firmicutes), whose members can encode useful complex traits such as solvent production, gas-fermentation, and lignocellulose breakdown. We describe 270 genome sequences of solventogenic clostridia from a comprehensive industrial strain collection assembled by Professor David Jones that includes 194 C. beijerinckii, 57 C. saccharobutylicum, 4 C. saccharoperbutylacetonicum, 5 C. butyricum, 7 C. acetobutylicum, and 3 C. tetanomorphum genomes. We report methods, analyses and characterization for phylogeny, key attributes, core biosynthetic genes, secondary metabolites, plasmids, prophage/CRISPR diversity, cellulosomes and quorum sensing for the 6 species. The expanded genomic data described here will facilitate e","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024 May","modification":"2026-04-08T18:53:09.103Z","creation":"2026-04-08T11:01:46.98Z"},"accession":"S-EPMC11063209","cross_references":{"pubmed":["38693191"],"doi":["10.1038/s41597-024-03210-6"]}}