<HashMap><database>biostudies-literature</database><scores/><additional><submitter>Zuo H</submitter><funding>Japan Agency for Medical Research and Development</funding><funding>JSPS</funding><pagination>dlae073</pagination><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/S-EPMC11089413</full_dataset_link><repository>biostudies-literature</repository><omics_type>Unknown</omics_type><volume>6(3)</volume><pubmed_abstract>&lt;h4>Background&lt;/h4>The spread of transmissible plasmids with carbapenemase genes has contributed to a global increase in carbapenemase-producing Enterobacterales over the past two decades, with &lt;i>bla&lt;/i>&lt;sub>NDM&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA&lt;/sub> among the most prevalent carbapenemase genes.&lt;h4>Objectives&lt;/h4>To characterize an &lt;i>Escherichia coli&lt;/i> isolate co-carrying &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> (JBEHAAB-19-0176) that was isolated in the Japan Antimicrobial Resistant Bacterial Surveillance in 2019-20, and to evaluate the functional advantage of carrying both genes as opposed to only one.&lt;h4>Methods&lt;/h4>The whole-genome sequence of the isolate was determined using long- and short-read sequencing. Growth assay and co-culture experiments were performed for phenotypic characterization in the presence of different β-lactam antibiotics.&lt;h4>Results&lt;/h4>WGS analysis showed that &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> were carried by the same IncX3 plasmid, pJBEHAAB-19-0176_NDM-OXA. Genetic characterization of the plasmid suggested that the plasmid emerged through the formation of a co-integrate and resolution of two typical IncX3 plasmids harbouring &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub>, which involved two recombination events at the IS&lt;i>3000&lt;/i> and IS&lt;i>26&lt;/i> sequences. When cultured in the presence of piperacillin or cefpodoxime, the growth rate of the transformant co-harbouring &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> was significantly higher than the transformant with only &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub>. Furthermore, in co-culture where the two &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub>-harbouring transformants were allowed to compete directly, the strain additionally harbouring &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> showed a marked growth advantage.&lt;h4>Conclusions&lt;/h4>The additional carriage of &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> confers a selective advantage to bacteria in the presence of piperacillin and cefpodoxime. These findings may explain the current epidemiology of carbapenemase-producing Enterobacterales, in which bacteria carrying both &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-48&lt;/sub>-like genes have emerged independently worldwide.</pubmed_abstract><journal>JAC-antimicrobial resistance</journal><pubmed_title>Emergence of an IncX3 plasmid co-harbouring the carbapenemase genes &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub>.</pubmed_title><pmcid>PMC11089413</pmcid><funding_grant_id>JP19fk0108061</funding_grant_id><funding_grant_id>23fk0108604</funding_grant_id><funding_grant_id>JP20K07496</funding_grant_id><pubmed_authors>Uechi K</pubmed_authors><pubmed_authors>Nakano A</pubmed_authors><pubmed_authors>Yahara K</pubmed_authors><pubmed_authors>Sugawara Y</pubmed_authors><pubmed_authors>Zuo H</pubmed_authors><pubmed_authors>Kondo K</pubmed_authors><pubmed_authors>Kayama S</pubmed_authors><pubmed_authors>Kawakami S</pubmed_authors><pubmed_authors>Sugai M</pubmed_authors></additional><is_claimable>false</is_claimable><name>Emergence of an IncX3 plasmid co-harbouring the carbapenemase genes &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub>.</name><description>&lt;h4>Background&lt;/h4>The spread of transmissible plasmids with carbapenemase genes has contributed to a global increase in carbapenemase-producing Enterobacterales over the past two decades, with &lt;i>bla&lt;/i>&lt;sub>NDM&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA&lt;/sub> among the most prevalent carbapenemase genes.&lt;h4>Objectives&lt;/h4>To characterize an &lt;i>Escherichia coli&lt;/i> isolate co-carrying &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> (JBEHAAB-19-0176) that was isolated in the Japan Antimicrobial Resistant Bacterial Surveillance in 2019-20, and to evaluate the functional advantage of carrying both genes as opposed to only one.&lt;h4>Methods&lt;/h4>The whole-genome sequence of the isolate was determined using long- and short-read sequencing. Growth assay and co-culture experiments were performed for phenotypic characterization in the presence of different β-lactam antibiotics.&lt;h4>Results&lt;/h4>WGS analysis showed that &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> were carried by the same IncX3 plasmid, pJBEHAAB-19-0176_NDM-OXA. Genetic characterization of the plasmid suggested that the plasmid emerged through the formation of a co-integrate and resolution of two typical IncX3 plasmids harbouring &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub>, which involved two recombination events at the IS&lt;i>3000&lt;/i> and IS&lt;i>26&lt;/i> sequences. When cultured in the presence of piperacillin or cefpodoxime, the growth rate of the transformant co-harbouring &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> was significantly higher than the transformant with only &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub>. Furthermore, in co-culture where the two &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub>-harbouring transformants were allowed to compete directly, the strain additionally harbouring &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> showed a marked growth advantage.&lt;h4>Conclusions&lt;/h4>The additional carriage of &lt;i>bla&lt;/i>&lt;sub>OXA-181&lt;/sub> confers a selective advantage to bacteria in the presence of piperacillin and cefpodoxime. These findings may explain the current epidemiology of carbapenemase-producing Enterobacterales, in which bacteria carrying both &lt;i>bla&lt;/i>&lt;sub>NDM-5&lt;/sub> and &lt;i>bla&lt;/i>&lt;sub>OXA-48&lt;/sub>-like genes have emerged independently worldwide.</description><dates><release>2024-01-01T00:00:00Z</release><publication>2024 Jun</publication><modification>2026-06-03T04:30:26.451Z</modification><creation>2026-04-24T03:09:42.845Z</creation></dates><accession>S-EPMC11089413</accession><cross_references><pubmed>38741895</pubmed><doi>10.1093/jacamr/dlae073</doi></cross_references></HashMap>