{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Frantsuzova E"],"funding":["Russian Science Foundation"],"pagination":["339"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11117675"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["13(5)"],"pubmed_abstract":["The strain <i>Gordonia polyisoprenivorans</i> 135 is able to utilize a wide range of aromatic compounds. The aim of this work was to study the features of genetic organization and biotechnological potential of the strain <i>G. polyisoprenivorans</i> 135 as a degrader of aromatic compounds. The study of the genome of the strain 135 and the pangenome of the <i>G. polyisoprenivorans</i> species revealed that some genes, presumably involved in PAH catabolism, are atypical for <i>Gordonia</i> and belong to the pangenome of <i>Actinobacteria</i>. Analyzing the intergenic regions of strain 135 alongside the \"panIGRome\" of <i>G. polyisoprenivorans</i> showed that some intergenic regions in strain 135 also differ from those located between the same pairs of genes in related strains. The strain <i>G. polyisoprenivorans</i> 135 in our work utilized naphthalene (degradation degree 39.43%) and grew actively on salicylate. At present, this is the only known strain of <i>G. polyisoprenivorans</i> with experimentally confirmed ability to utilize these compounds."],"journal":["Biology"],"pubmed_title":["Genomic, Phylogenetic and Physiological Characterization of the PAH-Degrading Strain <i>Gordonia polyisoprenivorans</i> 135."],"pmcid":["PMC11117675"],"funding_grant_id":["22-74-10082"],"pubmed_authors":["Solyanikova I","Bogun A","Delegan Y","Streletskii R","Frantsuzova E","Vetrova A","Kopylova O"],"additional_accession":[]},"is_claimable":false,"name":"Genomic, Phylogenetic and Physiological Characterization of the PAH-Degrading Strain <i>Gordonia polyisoprenivorans</i> 135.","description":"The strain <i>Gordonia polyisoprenivorans</i> 135 is able to utilize a wide range of aromatic compounds. The aim of this work was to study the features of genetic organization and biotechnological potential of the strain <i>G. polyisoprenivorans</i> 135 as a degrader of aromatic compounds. The study of the genome of the strain 135 and the pangenome of the <i>G. polyisoprenivorans</i> species revealed that some genes, presumably involved in PAH catabolism, are atypical for <i>Gordonia</i> and belong to the pangenome of <i>Actinobacteria</i>. Analyzing the intergenic regions of strain 135 alongside the \"panIGRome\" of <i>G. polyisoprenivorans</i> showed that some intergenic regions in strain 135 also differ from those located between the same pairs of genes in related strains. The strain <i>G. polyisoprenivorans</i> 135 in our work utilized naphthalene (degradation degree 39.43%) and grew actively on salicylate. At present, this is the only known strain of <i>G. polyisoprenivorans</i> with experimentally confirmed ability to utilize these compounds.","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024 May","modification":"2026-04-19T03:28:40.644Z","creation":"2026-04-19T03:14:07.843Z"},"accession":"S-EPMC11117675","cross_references":{"pubmed":["38785821"],"doi":["10.3390/biology13050339"]}}