{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Fischer MS"],"funding":["NIH Office of the Director","National Heart, Lung, and Blood Institute","NHLBI NIH HHS","National Institute of General Medical Sciences","NIH Chemistry-Biology Interface Training Program","NIGMS NIH HHS","NIH HHS","HORIZON EUROPE Marie Sklodowska-Curie Actions"],"pagination":["2315-2322"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11344481"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["23(7)"],"pubmed_abstract":["Native top-down mass spectrometry (nTDMS) allows characterization of protein structure and noncovalent interactions with simultaneous sequence mapping and proteoform characterization. The majority of nTDMS studies utilize purified recombinant proteins, with significant challenges hindering application to endogenous systems. To perform native top-down proteomics (nTDP), where endogenous proteins from complex biological systems are analyzed by nTDMS, it is essential to separate proteins under nondenaturing conditions. However, it remains difficult to achieve high resolution with MS-compatible online chromatography while preserving protein tertiary structure and noncovalent interactions. Herein, we report the use of online mixed-bed ion exchange chromatography (IEC) to enable separation of endogenous proteins from complex mixtures under nondenaturing conditions, preserving noncovalent interactions for nTDP analysis. We have successfully detected large proteins (>146 kDa) and identified endogenous metal-binding and oligomeric protein complexes in human heart tissue lysate. The use of a mixed-bed stationary phase allowed retention and elution of proteins over a wide range of isoelectric points without altering the sample or mobile phase pH. Overall, our method provides a simple online IEC-MS platform that can effectively separate proteins from complex mixtures under nondenaturing conditions and preserve higher-order structure for nTDP applications."],"journal":["Journal of proteome research"],"pubmed_title":["Online Mixed-Bed Ion Exchange Chromatography for Native Top-Down Proteomics of Complex Mixtures."],"pmcid":["PMC11344481"],"funding_grant_id":["R01 HL109810","R01 GM125085","T32 GM152341","OD018475","HL109810","R01 GM117058","T32 GM008505","R01 HL096971","101068151","S10 OD018475","GM125085","HL096971","GM117058","T32GM008505"],"pubmed_authors":["Chan HJ","Rogers HT","Larson EJ","Fischer MS","Ge Y","Krichel B","Gao Z","Chapman EA"],"additional_accession":[]},"is_claimable":false,"name":"Online Mixed-Bed Ion Exchange Chromatography for Native Top-Down Proteomics of Complex Mixtures.","description":"Native top-down mass spectrometry (nTDMS) allows characterization of protein structure and noncovalent interactions with simultaneous sequence mapping and proteoform characterization. The majority of nTDMS studies utilize purified recombinant proteins, with significant challenges hindering application to endogenous systems. To perform native top-down proteomics (nTDP), where endogenous proteins from complex biological systems are analyzed by nTDMS, it is essential to separate proteins under nondenaturing conditions. However, it remains difficult to achieve high resolution with MS-compatible online chromatography while preserving protein tertiary structure and noncovalent interactions. Herein, we report the use of online mixed-bed ion exchange chromatography (IEC) to enable separation of endogenous proteins from complex mixtures under nondenaturing conditions, preserving noncovalent interactions for nTDP analysis. We have successfully detected large proteins (>146 kDa) and identified endogenous metal-binding and oligomeric protein complexes in human heart tissue lysate. The use of a mixed-bed stationary phase allowed retention and elution of proteins over a wide range of isoelectric points without altering the sample or mobile phase pH. Overall, our method provides a simple online IEC-MS platform that can effectively separate proteins from complex mixtures under nondenaturing conditions and preserve higher-order structure for nTDP applications.","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024 Jul","modification":"2026-06-02T08:45:06.568Z","creation":"2026-04-16T03:12:52.288Z"},"accession":"S-EPMC11344481","cross_references":{"pubmed":["38913967"],"doi":["10.1021/acs.jproteome.4c00430"]}}