{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["65(9)"],"submitter":["Szczesniak MW"],"pubmed_abstract":["CANTATAdb 3.0 is an updated database of plant long non-coding RNAs (lncRNAs), containing 571,688 lncRNAs identified across 108 species, including 100 Magnoliopsida (flowering plants), a significant expansion from the previous version. A notable feature is the inclusion of 112,980 lncRNAs that are expressed specifically in certain plant organs or embryos, indicating their potential role in development and organ-specific processes. In addition, CANTATAdb 3.0 includes 74,886 pairs of evolutionarily conserved lncRNAs found across 47 species and inferred from genome-genome alignments as well as conserved lncRNAs obtained using a similarity search approach in 5,479 species pairs, which would further aid in the selection of lncRNAs for functional studies. Interestingly, we find that conserved lnc"],"journal":["Plant & cell physiology"],"pagination":["1486-1493"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11447640"],"repository":["biostudies-literature"],"pubmed_title":["CANTATAdb 3.0: An Updated Repository of Plant Long Non-Coding RNAs."],"pmcid":["PMC11447640"],"pubmed_authors":["Szczesniak MW","Wanowska E"],"additional_accession":[]},"is_claimable":false,"name":"CANTATAdb 3.0: An Updated Repository of Plant Long Non-Coding RNAs.","description":"CANTATAdb 3.0 is an updated database of plant long non-coding RNAs (lncRNAs), containing 571,688 lncRNAs identified across 108 species, including 100 Magnoliopsida (flowering plants), a significant expansion from the previous version. A notable feature is the inclusion of 112,980 lncRNAs that are expressed specifically in certain plant organs or embryos, indicating their potential role in development and organ-specific processes. In addition, CANTATAdb 3.0 includes 74,886 pairs of evolutionarily conserved lncRNAs found across 47 species and inferred from genome-genome alignments as well as conserved lncRNAs obtained using a similarity search approach in 5,479 species pairs, which would further aid in the selection of lncRNAs for functional studies. Interestingly, we find that conserved lnc","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024 Oct","modification":"2025-04-04T01:14:39.58Z","creation":"2025-04-04T01:14:39.58Z"},"accession":"S-EPMC11447640","cross_references":{"pubmed":["39018027"],"doi":["10.1093/pcp/pcae081"]}}