{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Maguvu TE"],"funding":["California Cherry Board"],"pagination":["e0132424"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC11448091"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["12(10)"],"pubmed_abstract":["To gain insights into the diversity of <i>Pseudomonas syringae</i> sensu lato affecting sweet cherry in California, we sequenced and analyzed the phylogenomic and genomic architecture of 86 fluorescent pseudomonads isolated from symptomatic and asymptomatic cherry tissues. Fifty-eight isolates were phylogenetically placed within the <i>P. syringae</i> species complex and taxonomically classified into five genomospecies: <i>P. syringae</i> pv. <i>syringae</i>, <i>P. syringae</i>, <i>Pseudomonas cerasi</i>, <i>Pseudomonas viridiflava</i>, and <i>A</i>. We annotated components of the type III secretion system and phytotoxin-encoding genes and correlated the data with pathogenicity phenotypes. Intact probable regulatory protein HrpR was annotated in the genomic sequences of all isolates of <i>"],"journal":["Microbiology spectrum"],"pubmed_title":["Pathogenicity, phylogenomic, and comparative genomic study of &lt;i&gt;Pseudomonas syringae&lt;/i&gt; sensu lato affecting sweet cherry in California."],"pmcid":["PMC11448091"],"funding_grant_id":["23-CCB5400-02","24-CCB5400-02"],"pubmed_authors":["Dardani G","Shipley E","Nouri MT","Yaghmour MA","Maguvu TE","Trouillas FP","Frias RJ","Hernandez-Rosas AI"],"additional_accession":[]},"is_claimable":false,"name":"Pathogenicity, phylogenomic, and comparative genomic study of &lt;i&gt;Pseudomonas syringae&lt;/i&gt; sensu lato affecting sweet cherry in California.","description":"To gain insights into the diversity of <i>Pseudomonas syringae</i> sensu lato affecting sweet cherry in California, we sequenced and analyzed the phylogenomic and genomic architecture of 86 fluorescent pseudomonads isolated from symptomatic and asymptomatic cherry tissues. Fifty-eight isolates were phylogenetically placed within the <i>P. syringae</i> species complex and taxonomically classified into five genomospecies: <i>P. syringae</i> pv. <i>syringae</i>, <i>P. syringae</i>, <i>Pseudomonas cerasi</i>, <i>Pseudomonas viridiflava</i>, and <i>A</i>. We annotated components of the type III secretion system and phytotoxin-encoding genes and correlated the data with pathogenicity phenotypes. Intact probable regulatory protein HrpR was annotated in the genomic sequences of all isolates of <i>","dates":{"release":"2024-01-01T00:00:00Z","publication":"2024 Oct","modification":"2025-04-05T08:58:04.281Z","creation":"2025-04-05T08:58:04.281Z"},"accession":"S-EPMC11448091","cross_references":{"pubmed":["39225473"],"doi":["10.1128/spectrum.01324-24"]}}